HsaEX6071907 @ hg38
Exon Skipping
Gene
ENSG00000072110 | ACTN1
Description
actinin alpha 1 [Source:HGNC Symbol;Acc:HGNC:163]
Coordinates
chr14:68909955-68921125:-
Coord C1 exon
chr14:68921006-68921125
Coord A exon
chr14:68912156-68912242
Coord C2 exon
chr14:68909955-68910042
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGCTGCTGCTGTTTCTGTAGAAA
3' ss Score
7.46
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GTGAACGCTTGGCCAAGCCAGAGCGAGGCAAGATGAGAGTGCACAAGATCTCCAACGTCAACAAGGCCCTGGATTTCATAGCCAGCAAAGGCGTCAAACTGGTGTCCATCGGAGCCGAAG
Seq A exon
AAATCGTGGATGGGAATGTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTGCGCTTTGCCATCCAGGACATCTCCGTGGAAG
Seq C2 exon
AGACTTCAGCCAAGGAAGGGCTGCTCCTGTGGTGTCAGAGAAAGACAGCCCCTTACAAAAATGTCAACATCCAGAACTTCCACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000072110-'42-21,'42-19,45-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.017 A=0.003 C2=0.016
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(11.7=58.3)
A:
PF0030726=CH=PD(20.6=70.0)
C2:
PF0030726=CH=PU(24.0=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGCAAGATGAGAGTGCAC
R:
TGTGGAAGTTCTGGATGTTGACA
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains