GgaEX1006130 @ galGal4
Exon Skipping
Gene
ENSGALG00000009474 | ACTN1
Description
alpha-actinin-1 [Source:RefSeq peptide;Acc:NP_989458]
Coordinates
chr5:27532896-27540671:+
Coord C1 exon
chr5:27532896-27533015
Coord A exon
chr5:27539983-27540069
Coord C2 exon
chr5:27540631-27540671
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTTTTCCCCTAGAAA
3' ss Score
12.34
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGAACGTTTGGCTAAGCCCGAAAGAGGCAAAATGCGAGTGCACAAAATATCCAACGTGAACAAGGCCTTGGATTTCATTGCCAGCAAAGGAGTCAAACTAGTATCAATTGGAGCAGAAG
Seq A exon
AAATTGTGGATGGCAACGTTAAAATGACTCTTGGAATGATCTGGACCATCATCCTTCGTTTTGCCATTCAGGATATCTCAGTTGAAG
Seq C2 exon
AGACATCTGCTAAAGAAGGACTTTTGTTATGGTGTCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(39.2=100)
A:
PF0030726=CH=PD(20.6=70.0)
C2:
PF0030726=CH=PU(24.0=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTAAGCCCGAAAGAGGCAA
R:
CCTCTGACACCATAACAAAAGTCCT
Band lengths:
151-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]