GgaEX1006130 @ galGal3
Exon Skipping
Gene
ENSGALG00000009474 | ACTN1_CHICK
Description
NA
Coordinates
chr5:30548748-30556570:+
Coord C1 exon
chr5:30548748-30548867
Coord A exon
chr5:30555835-30555921
Coord C2 exon
chr5:30556483-30556570
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTTTTCCCCTAGAAA
3' ss Score
12.34
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGAACGTTTGGCTAAGCCCGAAAGAGGCAAAATGCGAGTGCACAAAATATCCAACGTGAACAAGGCCTTGGATTTCATTGCCAGCAAAGGAGTCAAACTAGTATCAATTGGAGCAGAAG
Seq A exon
AAATTGTGGATGGCAACGTTAAAATGACTCTTGGAATGATCTGGACCATCATCCTTCGTTTTGCCATTCAGGATATCTCAGTTGAAG
Seq C2 exon
AGACATCTGCTAAAGAAGGACTTTTGTTATGGTGTCAGAGGAAGACAGCTCCCTACAAAAATGTAAACATCCAGAACTTCCATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.024 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF051368=Phage_portal_2=FE(36.4=100),PF0030726=CH=FE(39.2=100)
A:
PF051368=Phage_portal_2=PD(4.5=16.7),PF0030726=CH=PD(20.6=70.0)
C2:
PF0030726=CH=PU(24.0=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAGCCCGAAAGAGGCAAA
R:
TTGTAGGGAGCTGTCTTCCTCT
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]