DreEX6062537 @ danRer10
Exon Skipping
Gene
ENSDARG00000007219 | actn1
Description
actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]
Coordinates
chr13:36225800-36232628:-
Coord C1 exon
chr13:36232509-36232628
Coord A exon
chr13:36228930-36229016
Coord C2 exon
chr13:36225800-36225887
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTGTTCTGCTCAGAGA
3' ss Score
7.76
5' ss Seq
AGGGTATAT
5' ss Score
3.89
Exon sequences
Seq C1 exon
GAGAACGCCTGGCCAAACCAGAGAGAGGAAAAATGAGAGTCCACAAGATCTCCAATGTGAATAAAGCTCTGGGCTTCATCGCCAGCAAAGGAGTCAAACTGGTTTCTATTGGAGCAGAGG
Seq A exon
AGATTGTTGATGGAAATGCTAAGATGACTCTCGGGATGATCTGGACCATTATCCTTCGCTTCGCCATCCAGGACATCTCAGTGGAGG
Seq C2 exon
AGACCTCAGCGAAAGAAGGCCTGCTGTTGTGGTGCCAGAGGAAAACGGCTCCCTACAAAAATGTCAACATTCAGAATTTCCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007219-'3-5,'3-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(39.2=100)
A:
PF0030726=CH=PD(20.6=70.0)
C2:
PF0030726=CH=PU(24.0=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAAACCAGAGAGAGGAA
R:
TGTAGGGAGCCGTTTTCCTCT
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]