BtaEX6054929 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011680 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr10:85120040-85121306:+
Coord C1 exon
chr10:85120040-85120167
Coord A exon
chr10:85120274-85120382
Coord C2 exon
chr10:85121140-85121306
Length
109 bp
Sequences
Splice sites
3' ss Seq
TGCCCCCTCCTTGGGCCCAGGGG
3' ss Score
7.08
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ACACCAGCTGCAGTCCGACGGCTCCCTGGTCATCAGCCGCGTGGCTGTGGAGGATGGAGGCTTCTACACGTGTGTCGCGTTCAACGGGCATGACCGGGACCAGCGCTGGGTCCAGCTCCGAGTGCTGG
Seq A exon
GGGAGCTGACTATCACAGGGCTGCCCTCCACAATGGAGGTGCCGGAAGGGGACACGGCCAGGCTGCTGTGTGTGGTGGCAGGAGAAAGCGTGAACATCCGATGGTCCAG
Seq C2 exon
GAACGGGCTGCCGGTGCGGGCCGACGGCCACCGTGTGCACCAGTCCCCGGACGGCACGCTGCTGATCCACAACCTGCGGGCCAGGGACGAGGGCTCCTACACGTGCAGCGCCTACCGTGGAAGCCAGGCCGTCAGCCGCAGCACTGAGGTGAAGGTGGTCCCACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011680-'32-36,'32-34,33-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=0.135 C2=0.175
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(49.4=93.2)
A:
PF0767911=I-set=PU(39.1=91.9)
C2:
PF0767911=I-set=PD(59.8=91.2)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGAGGATGGAGGCTTCT
R:
GACCACCTTCACCTCAGTGCT
Band lengths:
244-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]