Special

GgaEX6038139 @ galGal4

Exon Skipping

Gene
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr5:25590190-25592452:-
Coord C1 exon
chr5:25592325-25592452
Coord A exon
chr5:25591702-25591810
Coord C2 exon
chr5:25590190-25590365
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTGTTTACCTTCTGGTTTAGGAG
3' ss Score
9.6
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACACAGACAGCAGTCAGATGGGGCCCTGGTGATCAGCCGGGTTAGCTCTGAGGACGCCGGCTTCTTTACCTGCATCGCCTCAAATGGACGTGACCAGGACCAGCGCCAGGTCCTGCTCCGACCTTTAG
Seq A exon
GAGGGCTGAGGATTACTGGTCTTCTGCCAAGCATCAAGGTATCTGAAGGAGAAACTGCTCAACTTCATTGCACAGTGACTGGCAACAATGTGAATATAAGGTGGTCAAG
Seq C2 exon
AAATGGAGTCCCAGTGCGGGCAGATGGCCGCCATATCCACCTGTCCCAGGATGGAAGCCTGATCATAAGCAACATTCAGTTGGCTGATGAGGGATCCTACACCTGCAGTGCCTACAGCAGCAGCAACTCTGTCAGTGCCAGCACGGAGGTGAAAGTGTTGAGGAGCAGGCCCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009315-'31-40,'31-37,33-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.273 A=0.000 C2=0.083
Domain overlap (PFAM):

C1:
PF0767911=I-set=PD(48.2=90.9)
A:
PF0767911=I-set=PU(39.1=91.9)
C2:
PF0767911=I-set=PD(59.8=86.7)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGCCGGGTTAGCTCTGA
R:
AACACTTTCACCTCCGTGCTG
Band lengths:
257-366
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]