MmuEX6081995 @ mm10
Exon Skipping
Gene
ENSMUSG00000021223 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:MGI Symbol;Acc:MGI:2386139]
Coordinates
chr12:83786555-83789321:+
Coord C1 exon
chr12:83786555-83786682
Coord A exon
chr12:83786769-83786877
Coord C2 exon
chr12:83789155-83789321
Length
109 bp
Sequences
Splice sites
3' ss Seq
CAATATCTTCTCATGCCTAGGGG
3' ss Score
5.79
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCACCAGGTGCAGCCTGATGGCTCTCTGGTCATCAGCCGAGTGGATGTGGAAGATGGGGGCTACTACAGCTGTGTTGCTTTTAATGGGCAGGACCGAGACCAGCGCTGGGTCCAGCTCAGAGTTCTCA
Seq A exon
GGGAGCTGACAATCACAGGCCTGCCTCCTGCTGTGACCGTGGCAGAGGGTGACACTGCCAGGCTTCTGTGTGTGGTGGCTGGAGAAAGTGTGAACATCCGGTGGTCCAG
Seq C2 exon
GAATGGCCTGCCAATACAGGCCGACGGTCACCGTGTGCACCAGTCCCCAGATGGCACACTGTTGATCCACAACTTGCGGCCCAGGGACGAGGGCTCTTACACATGCAGTGCCTTCCGTGGGAGCCAGGCTGTGAGTCGCAGCACCGAGGTGAAGGTGGCCCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021223-'26-30,'26-26,30-30=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=0.018 C2=0.158
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(49.4=93.2)
A:
PF0767911=I-set=PU(39.1=91.9)
C2:
PF0767911=I-set=PD(59.8=91.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAGTGGATGTGGAAGATG
R:
CACCTTCACCTCGGTGCTG
Band lengths:
250-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types