RnoEX6029278 @ rn6
Exon Skipping
Gene
ENSRNOG00000009448 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:RGD Symbol;Acc:1311176]
Coordinates
chr6:107270660-107273502:+
Coord C1 exon
chr6:107270660-107270787
Coord A exon
chr6:107270902-107271010
Coord C2 exon
chr6:107273336-107273502
Length
109 bp
Sequences
Splice sites
3' ss Seq
CAATGTCTTCCCATGCTTAGGGG
3' ss Score
6.41
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCACCAGGTGCAGCATGATGGCTCTCTGGTCATCAGCCGAGTGACTGTGGAAGATGGTGGCTTTTACACCTGTGTTGCTTTTAATGGGCATGACCGAGACCAGCGCTGGGTCCAGCTCAGAGTTCAGA
Seq A exon
GGGAGCTGACAATCACAGGCCTGCCTCCTGCCATGACGGTGCCAGAGGGTGACACTGCCAGGCTTCTGTGTGTGGTGGCTGGAGACAGTGTGAACATTAGGTGGTCCAG
Seq C2 exon
GAACGGACTGCCAATACAGGCTGATGGCCACCGTGTGCACCAGTCCCCAGATGGCACACTGTTGATCCACAACTTGCGGCCCAGGGACGAAGGCTCTTACACATGCAGTGCCTTCCGTGGGAGCCAGGCTGTGAGCCGCAGCACTGAGGTGAAGGTGGCTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009448-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.162 C2=0.211
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(49.4=93.2)
A:
PF0767911=I-set=PU(39.1=91.9)
C2:
PF0767911=I-set=PD(59.8=91.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAGTGACTGTGGAAGATG
R:
GAGAGCCACCTTCACCTCAGT
Band lengths:
256-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]