DreEX6056393 @ danRer10
Exon Skipping
Gene
ENSDARG00000027867 | paplna
Description
papilin a, proteoglycan-like sulfated glycoprotein [Source:ZFIN;Acc:ZDB-GENE-070815-4]
Coordinates
chr17:51039396-51041955:-
Coord C1 exon
chr17:51041828-51041955
Coord A exon
chr17:51040024-51040132
Coord C2 exon
chr17:51039396-51039571
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTTGTAATGTGTTTCTGCAGGGG
3' ss Score
9.37
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GCATTCTCAGCACTCGGACGGCACACTGGTGATCAAGCAGCTGACCGCAGATGATTCTGGACTTTATACCTGCACAGTCACAGACGCACAGAAGTTTGAGGAGCGTCAGGTCCAGCTCAGAGTTCTGG
Seq A exon
GGGACCTCAGGATCACTAAAGCCCCCATTGATGTGGATGTGGTGCAGGGCAGCACTGCTCAGCTGGCCTGCGTCGTGACTGGAGAAAACGTGAACGTCGGCTGGTCCAG
Seq C2 exon
GAATGGTGTACCAGTGCGGCCGGATGGACATCGTGTTCATGTGTCTGCAGACGGGACGCTCATACTCAATAATGTGCAGTCAGTGGACGAGGGCACGTACACCTGCAACGCCTACACGGGGACATTATCCGTCAGCGCAGCGGCTGAAATACGACTGGCCAAAACCCCTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027867-'32-33,'32-32,33-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.027 C2=0.100
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(46.1=93.2)
A:
PF0767911=I-set=PU(39.1=91.9)
C2:
PF0767911=I-set=PD(59.8=86.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGACCGCAGATGATTCT
R:
TTGGCCAGTCGTATTTCAGCC
Band lengths:
253-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]