BtaEX6054931 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011680 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr10:85114869-85116890:+
Coord C1 exon
chr10:85114869-85114989
Coord A exon
chr10:85115314-85115452
Coord C2 exon
chr10:85116428-85116890
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATCCTGGGCTCTCTCCCCAGGTC
3' ss Score
11.19
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTTCGGGTGCTGCCCTGATGGGGTGACCGCGGCCAAGGGGCCTCATCAGGCGGGCTGCACGAGCTCTTACGGACGCGACAACGCCGGGGGCAGGCCAGGATCAAGAGCAGCGGCCTCCACA
Seq A exon
GTCCCCAATGCCCACCGGCCCCAGGCCCAGCAGAATGAGCCCAGCGAGTGCCGGGGCTCCCAGTTCGGCTGCTGCTATGACCACGTGGCCCCTGCGGCAGGTCCTCTGGGGGAAGGCTGTGTGGGCCAGCCCAGCTCTG
Seq C2 exon
CGTACCCCGTGCGGTGCCTGCTGCCCAGCGCCCACGGCTCCTGCACCGACTGGGCTGCCCGCTGGTACTTCGTCCCCTCCGTGGGCCAGTGTAACCGCTTCTGGTATGGCGGCTGCCATGGCAACGCCAACAACTTTGCCTCGGAAGAGGAGTGTGTGAGTGCCTGCCGGGGACCCCAGCCCGGGGCGGGGGCCTCTGGCCAGAGCACCCATGGAGATGGTGGCAGCAGCGGTCCTGGGGGCCAGCAGGAGGCTAGCCAGCATGGGCCGGGGCCCATGGTCCAGAGAGGACCCTTGCCTTCCGGTGGCCTCCGGTGGCAAGACCAAGAGCCTGGGCCGGGGGTGACGGACCACAGACAGGCCTTTGGAGAGGGGCCCTGGGGCCAGGAGACTGGGCCCAGTCCCCCTGGACTGAGCGGAGACGCAGGACGACCAGCGCCTCCTTCCCGTGGCTCCTCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011680-'19-25,'19-23,20-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.537 A=0.298 C2=0.658
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001418=Kunitz_BPTI=WD(100=34.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCAGGATCAAGAGCAG
R:
CCATCTCCATGGGTGCTCTGG
Band lengths:
251-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]