HsaEX6072087 @ hg19
Exon Skipping
Gene
ENSG00000100767 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:19262]
Coordinates
chr14:73727417-73729535:+
Coord C1 exon
chr14:73727417-73727537
Coord A exon
chr14:73727864-73728002
Coord C2 exon
chr14:73729058-73729535
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATCATGGGTTTCCTCCCCAGGTC
3' ss Score
10.23
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTACGGGTGCTGCCCTGACAGGGTATCTGTCGCTGAGGGGCCCCATCACGCTGGCTGCACAAAGTCGTATGGTGGTGACAGCACCGGGGGCATGCCCAGGTCAAGGGCAGTGGCTTCTACA
Seq A exon
GTCCACAACACCCACCAGCCCCAGGCCCAGCAGAATGAGCCCAGTGAGTGCCGGGGCTCCCAGTTTGGCTGTTGCTATGACAACGTGGCCACTGCAGCCGGTCCTCTTGGGGAAGGCTGTGTGGGCCAGCCCAGCCATG
Seq C2 exon
CCTACCCCGTGCGGTGCCTGCTGCCCAGTGCCCATGGCTCTTGCGCAGACTGGGCTGCCCGCTGGTACTTCGTTGCCTCTGTGGGCCAATGTAACCGCTTCTGGTATGGCGGCTGCCATGGCAATGCCAATAACTTTGCCTCGGAGCAAGAGTGCATGAGCAGCTGCCAGGGATCTCTCCATGGGCCCCGTCGTCCCCAGCCTGGGGCTTCTGGAAGGAGCACCCACACGGATGGTGGCGGCAGCAGTCCTGCAGGCGAGCAGGAACCCAGCCAGCACAGGACAGGGGCCGCGGTGCAGAGAAAGCCCTGGCCTTCTGGTGGTCTCTGGCGGCAAGACCAACAGCCTGGGCCAGGGGAGGCCCCCCACACCCAGGCCTTTGGAGAATGGCCATGGGGGCAGGAGCTTGGGTCCAGGGCCCCTGGACTGGGTGGAGATGCCGGATCACCAGCGCCACCCTTCCACAGCTCCTCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100767-'20-21,'20-20,21-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=0.291 C2=0.650
Domain overlap (PFAM):
C1:
NO
A:
PF0001418=Kunitz_BPTI=PU(22.6=25.5)
C2:
PF0001418=Kunitz_BPTI=WD(100=33.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAGGGCAGTGGCTTCTAC
R:
TGTGGGTGCTCCTTCCAGAAG
Band lengths:
250-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)