GgaEX0013682 @ galGal4
Exon Skipping
Gene
ENSGALG00000009315 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr5:25597764-25601201:-
Coord C1 exon
chr5:25601084-25601201
Coord A exon
chr5:25600258-25600387
Coord C2 exon
chr5:25597764-25597945
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTCAATTCCTGTCTCTAAGGCA
3' ss Score
5.47
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
GTATGGATGCTGTCCTGATGGCGTATCAGCTGCCCGAGGTCCAAACAACATGGGATGCCCACAGTATGACAGTGACGTTCATATGAGAAGAAATCAGCCTGCTGCAGCTGTTCCAACA
Seq A exon
GCAAGCCAAGCCTTGTCCCAGCAGCACCCCTCTGGCGAGTGCCGCAGTTCAGTGTACGGCTGCTGTTTTGACAATGTCGCTTCAGCTTCAGGTCCTGAAGGGGAAGGATGTCTCAATAGGCCCAACTACC
Seq C2 exon
CATATCCTGTCATGTGCCTGCTGCCCAGTGCTCACGGCCCCTGTGCAAACTGGACCACTCGCTGGTACTTTGTGACTGTTGTTGGAAAGTGCAATCGGTTTTGGTATGGTGGCTGCCATGGCAATAAAAACAGCTTTGCCTCAGAGGAGGAATGCATGAGAGTGTGTCATAGCTCTGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009315_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001418=Kunitz_BPTI=WD(100=86.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACAGTATGACAGTGACG
R:
CCCCACAGAGCTATGACACAC
Band lengths:
244-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]