DreEX6056388 @ danRer10
Exon Skipping
Gene
ENSDARG00000027867 | paplna
Description
papilin a, proteoglycan-like sulfated glycoprotein [Source:ZFIN;Acc:ZDB-GENE-070815-4]
Coordinates
chr17:51057623-51063604:-
Coord C1 exon
chr17:51063517-51063604
Coord A exon
chr17:51061039-51061159
Coord C2 exon
chr17:51057623-51057959
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTTATATTTTCTCTACAAAGTCA
3' ss Score
4.91
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTATGGCTGTTGTCATGATGGTGTAACCGTAGCCCAAGGCCAAAACATGGAGGGCTGTCCAGATGCCTGGACACACTGGTCTTCATCA
Seq A exon
TCAGATACCGTACCATCTGCACCTGTAGACTGTCATTCATCTACATACGGCTGCTGCTATGATGGTGTGACGGCCGCTAGTGGGACTCATGGAGAGGGGTGCTCCAACCCCCCCAGCAACA
Seq C2 exon
CACAACGTTCTCTGTCCTGTGACCTACCCAATACGGTCGGGCCATGCGATCAGTGGACGTCCCGGTTCTACTTTGACCGTTCCGCCTCACGCTGCTTACACTTCTGGTATGGTGGCTGCCATGGCAACAGCAACAATTTCGCCTCGGAGGAGGAATGCCAGAAGATGTGCCTGAGATCAGAACTAAGGCAGCGGGACCAGGCACATGTTTTGTCTTTGCAGCACGGTAGACGGCGTTTCCCTGCACACGTCCAGCTCAGCTCTAGTGGAGCACACCGTGCACAGCGTGCTCACCAGCCGGCCTCCAATGCCATGCAGCAGAGCAACCCGGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027867-'23-25,'23-23,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.146 C2=0.363
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001418=Kunitz_BPTI=WD(100=46.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGTGTAACCGTAGCCCA
R:
GGCACATCTTCTGGCATTCCT
Band lengths:
244-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]