RnoEX6029284 @ rn6
Exon Skipping
Gene
ENSRNOG00000009448 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:RGD Symbol;Acc:1311176]
Coordinates
chr6:107264845-107267007:+
Coord C1 exon
chr6:107264845-107264965
Coord A exon
chr6:107265250-107265388
Coord C2 exon
chr6:107266554-107267007
Length
139 bp
Sequences
Splice sites
3' ss Seq
ACCTCTGACTTCTTCCCCAGGAC
3' ss Score
11.24
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTACGGATGCTGCCCTGACGGAGTGTCTGCAGCTAAGGGGCCCCAACAGGCTGGTTGTACCAGGTCTCACAGCAGTGACAATACTGGAAACAGGCCAGGGTCCAGGGCAGTAGTTTCCAAG
Seq A exon
GACCCCAAGATCCACCAATCTCAGGCCCATCCAAGCGAGATCAGCGAGTGTCGAAGCTCTCAGTTTGGCTGTTGCTATGACAATGTGGCTTTTGCAGCTGGTCCTCTGGGGGAAGGCTGTGTGGGTCAGCCCAGCTATG
Seq C2 exon
CCTACCCAGTGCGGTGTCTGCTGCCCAGTGCTCAAGGTTCGTGTGGAGACTGGGCTGCCCGTTGGTACTTTGTGGGATCAGTGGGCCGGTGCAACCGCTTTTGGTATGGCGGTTGCCACGGGAACGCCAATAACTTTGCTACGGAGCAGGAATGCATGGACACCTGCCGGGGGCAGCATGGGCCCCGCCGCCCTGAGGCAGGAGCAGCTGGACATCGTGTCCACATGGATGGTGGTCAACGTGGTCCCGGAGGCCAGCAGGAACCTGATTGGCACAGGATAGAAGCCACAGTCCCGAGACTGCCCTCACCTTCTGGAAGCCCTTGGTCGAGAGAACAAGAGCCTGGACCCGGGCAGGCGCCACACATCCCAGCCCAGGGGAAACGGCCCAGAGTCCCTGGACTGGATAGAGATGCTAGGCCACCAGTGCGGCCTACGCACAGCCCCTCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009448-'22-23,'22-21,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.634 A=0.191 C2=0.678
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001418=Kunitz_BPTI=WD(100=34.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGTGTCTGCAGCTAAGG
R:
GCAAAGTTATTGGCGTTCCCG
Band lengths:
243-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]