MmuEX6082001 @ mm10
Exon Skipping
Gene
ENSMUSG00000021223 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:MGI Symbol;Acc:MGI:2386139]
Coordinates
chr12:83780142-83782295:+
Coord C1 exon
chr12:83780142-83780262
Coord A exon
chr12:83780550-83780688
Coord C2 exon
chr12:83781821-83782295
Length
139 bp
Sequences
Splice sites
3' ss Seq
ACCTCTGGCTTTTTCTTCAGAAC
3' ss Score
10.52
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GTACGGATGCTGCCCCGACGGGGTGTCTGCAGCTGAGGGGCCCCAACAGGCTGGTTGTACCAGGTCTCACGGCAGTGACAATACGGGAAACAGGCCAGGGTCCAGGGCAGTAGCTTCCAAG
Seq A exon
AACCCCAAGATCCACCAACCCCAGGCCCATGAAGGCGAGCCCAGTGAGTGTCGAAGCTCTAGGTTTGGATGTTGCTATGACAATGTGGCTTCTGCAGCGGGTCCGCTGGGGGAAGGCTGTGTGGGCCAGCCCAGCTATG
Seq C2 exon
CTTACCCAGTGCGGTGTCTGCTGCCCAGTGCTCAAGGGTCATGTGGAGACTGGGCCGCCCGTTGGTACTTTGTGGCATCGGTGGGCCGGTGTAACCGCTTTTGGTATGGCGGCTGTCATGGCAACGCCAATAACTTTGCATCGGAGCAGGAGTGCATGAACACCTGCCGGGGACAGCATGGGCCCCGCCGTCCTGAGGCAGGAGCCGCTGGGCATCGTGCCCATGTGGATGGTGGTCAACGTGGTCCTGGAGGCCAGCAGGAACCTGACTGGCACAGGGCAGGAGCCACAATCCCGAGACTGCCCTCCCCTTCTGGAAGCCCTTGGCGGAGAGAACAAGAGCCTGCGCCAGGGGAGCCACCCCACATCCCAGCCTATGGAAACCGGCCTGGAGGCCAGGAAATCCGGCCCAGAGTTCCTGGACTGGACAGAGAGGCTAGGCCAGCAGTGCCGCCTACACATAGCCCCTCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021223-'20-20,'20-19,22-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.659 A=0.277 C2=0.692
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001418=Kunitz_BPTI=WD(100=33.3),PF0768612=V-set=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACAGGCTGGTTGTACC
R:
GTGTTCATGCACTCCTGCTCC
Band lengths:
243-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types