BtaEX6055584 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002137 | SUGT1
Description
Bos taurus SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) (SUGT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046203]
Coordinates
chr12:11131393-11144999:-
Coord C1 exon
chr12:11144909-11144999
Coord A exon
chr12:11140709-11140890
Coord C2 exon
chr12:11131393-11131530
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTTACTCCATAGATG
3' ss Score
10.68
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
Exon sequences
Seq C1 exon
ATTGAAATTAAAATGAAAAAGCCAGAGGCTGTGAGATGGGAAAAGCTAGAGGGGCAAGGAGATGTGCCTAACCCCAAACCGTTCATAGCAG
Seq A exon
ATGTAAAAAACCTATATCCATCATCATCTCATTATACAAGAAATTGGGATAAATTGGTCGGTGAGATCAAAGAAGAAGAAAAGAATGAAAAGTTGGAGGGAGATGCAGCTTTAAACAAATTGTTTCAGCAGATCTATTCAGATGGCTCTGATGAAGTGAAACGTGCCATGAACAAATCATTT
Seq C2 exon
ATGGAGTCTGGTGGTACAGTTTTGAGTACCAACTGGTCTGATGTAGGTAAAAGAAAAGTTGAAATCAATCCTCCTGATGATATGGAATGGAAAAAGTACTAAATAAATTTGTTTTCACTGTATTGCATATATTCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002137-'24-26,'24-23,26-26=AN
Average complexity
A_S
Mappability confidence:
88%=80=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.098 C2=0.303
Domain overlap (PFAM):
C1:
PF0496911=CS=PD(7.8=19.4)
A:
PF0500210=SGS=PU(58.5=78.7)
C2:
PF0500210=SGS=PD(39.0=94.1)
Main Skipping Isoform:
ENSBTAT00000002771fB6849
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATTAAAATGAAAAAGCCAGAGG
R:
AGGTGAATATATGCAATACAGTGAAA
Band lengths:
227-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]