DreEX0065885 @ danRer10
Exon Skipping
Gene
ENSDARG00000100083 | sgut1
Description
SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-041114-56]
Coordinates
chr1:27312390-27325511:+
Coord C1 exon
chr1:27312390-27312480
Coord A exon
chr1:27322874-27323046
Coord C2 exon
chr1:27324933-27325511
Length
173 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTAAAAATTTATTAGGCC
3' ss Score
5.48
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
ATAGAGATTAAGATGAAGAAGACTGAAGCCATACAGTGGGAAAAACTTCAAGGAGAAGAGACACTCTCCAACGTGAAGCATTTTACTGCAA
Seq A exon
GCCAGTATCCATCGTCATCCCACTACACACGAAACTGGGACAAGTTAGTGGGAGAAATAAAGGAGGAGGAAAAGAAGGAAAATCTGGAGGGTGATGCTGCTCTCAACAAGCTTTTTCAACAGATCTATTCGGATGGCTCGGATGATGTCAGACGGGCAATGAACAAGTCTTTT
Seq C2 exon
ATGGAATCAGGAGGCACTGTCCTCAGCACCAACTGGATAGATGTTGGTAAACGGAAAGTAGAGATGAACCCGCCTGATGACGTAGAGTGGAAAAAATATTAAAATAGGTAGATGACATTGTCTAAACTACCATCACCAGTTTGTCCTTACCCACTTCTTCAGTTGGTCAGACTTCTTCCTTTGTCAGACCCAGAATAGTTCTGGAATAAAATGAGATTTTTAACTTTTCTCTCTCTAGAATTAGTTTGTGTTTAACTAAACTAGCCTATTACATTTTTAAAGCATCACACATTAAAACAAATCAGCAGCTAAACATCTGTACTGAAAGTCACTTTTGCCGCTGTTAGGTCTCCACCTGTATAACAACATCTGTTAATTTTGATCACTGTTTTTATGTACTTGTGCGTTCCTAAATATGCTTTTGACATGCTGTAAATAAATGTTTCTTTTTTTTCTTGCTCTGTGATTGGGGTGCCCTTGGTCTCTTATCAATCTTTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100083_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.121 C2=0.121
Domain overlap (PFAM):
C1:
PF0496911=CS=PD(7.8=19.4)
A:
PF0500210=SGS=PU(58.5=82.8)
C2:
PF0500210=SGS=PD(39.0=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGGGAAAAACTTCAAGGAGA
R:
TCTGGGTCTGACAAAGGAAGA
Band lengths:
253-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]