HsaEX0062848 @ hg19
Exon Skipping
Gene
ENSG00000165416 | SUGT1
Description
SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) [Source:HGNC Symbol;Acc:16987]
Coordinates
chr13:53250365-53262007:+
Coord C1 exon
chr13:53250365-53250455
Coord A exon
chr13:53254109-53254290
Coord C2 exon
chr13:53261869-53262007
Length
182 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTTTTTACTTCATAGATG
3' ss Score
9.62
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
Exon sequences
Seq C1 exon
ATTGAAATTAAACTGAAAAAGCCAGAGGCTGTGAGATGGGAAAAGCTAGAGGGGCAAGGAGATGTGCCTACGCCAAAACAATTCGTAGCAG
Seq A exon
ATGTAAAGAACCTATATCCATCATCATCTCCTTATACAAGAAATTGGGATAAATTGGTTGGTGAGATCAAAGAAGAAGAAAAGAATGAAAAGTTGGAGGGAGATGCAGCTTTAAACAGATTATTTCAGCAGATCTATTCAGATGGTTCTGATGAAGTGAAACGTGCCATGAACAAATCCTTT
Seq C2 exon
ATGGAGTCGGGTGGTACAGTTTTGAGTACCAACTGGTCTGATGTAGGTAAAAGGAAAGTTGAAATCAATCCTCCTGATGATATGGAATGGAAAAAGTACTAAATAAATTAATTTGCTCTCATCGTATTGTGTATATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165416-'13-13,'13-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.164 C2=0.333
Domain overlap (PFAM):
C1:
PF0496911=CS=PD(7.8=19.4)
A:
PF0500210=SGS=PU(58.5=78.7)
C2:
PF0500210=SGS=PD(39.0=94.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATTAAACTGAAAAAGCCAGAGG
R:
TGAATATACACAATACGATGAGAGCA
Band lengths:
228-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)