MmuEX6042870 @ mm10
Exon Skipping
Gene
ENSMUSG00000022024 | Sugt1
Description
SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1915205]
Coordinates
chr14:79619709-79629755:+
Coord C1 exon
chr14:79619709-79619799
Coord A exon
chr14:79624841-79625022
Coord C2 exon
chr14:79628852-79629755
Length
182 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTTTCACTTTGCAGATG
3' ss Score
12.56
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
Exon sequences
Seq C1 exon
ATTGAAATTAAAATGAAAAAGCCAGAGGCGGTGAGATGGGAAAAGCTAGAGGGACAAGGAGATGAGCCCACACCGAAACAGTTCACAGCAG
Seq A exon
ATGTAAAGAACATGTATCCGTCCTCATCTCACTATACCCGGAACTGGGATAAGTTGGTTGGCGAAATCAAAGAAGAAGAAAAGAACGAGAAGCTGGAGGGCGACGCAGCTTTAAACAAGTTATTCCAGCAGATCTACTCAGACGGTTCCGATGAAGTGAAACGTGCCATGAACAAGTCATTT
Seq C2 exon
ATGGAGTCTGGTGGTACAGTCTTGAGTACCAACTGGTCTGATGTAGGTAAAAGGAAAGTTGAAATCAACCCTCCCGATGATATGGAATGGAAACAGTACTAAATAAATCAATTTGCTATCACTGTATTGCGTGTGTTCGAGAGAGCCCATTGTGTGCTTTATCATATTCTTGAGTTTTAAACAGTATCTTTTGAAAGATTAAACCTTCTTGCCTCTCTGTGCTTTAGAAATGATTTTTCCTGCAAGTATTCTAAAGAGTGACAATCACATCTTATCATTTCTGTCCTTAAGGATTTTGCACATCCTGAAACTGAATGAAATGCCAGTTGTTCCTAGATAGATCCGCTCTGTCTAGTTATGAAGTGGAGAAATCTTTAATAGCATCTTGGGTAATTGCCTTATTTTTGATGCAGTGTTCTGTCAATAATTGATTAGACCTGGCAACTTTGGTGGGTCTAACGTTTTCAGCTTCAGTGTTGTGTTTACTTTTCAGAGCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022024-'20-22,'20-20,25-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.570 A=0.290 C2=0.667
Domain overlap (PFAM):
C1:
PF0496911=CS=PD(7.8=19.4)
A:
PF0500210=SGS=PU(58.5=78.7)
C2:
PF0500210=SGS=PD(39.0=94.1)
Main Skipping Isoform:
ENSMUST00000054908fB3979
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACACCGAAACAGTTCACA
R:
AGCACAGAGAGGCAAGAAGGT
Band lengths:
248-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types