RnoEX0087542 @ rn6
Exon Skipping
Gene
ENSRNOG00000012594 | Sugt1
Description
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone [Source:RGD Symbol;Acc:1307550]
Coordinates
chr15:61905393-61914072:+
Coord C1 exon
chr15:61905393-61905483
Coord A exon
chr15:61910078-61910259
Coord C2 exon
chr15:61913765-61914072
Length
182 bp
Sequences
Splice sites
3' ss Seq
ATCTGCCTTTTACTTTGCAGATG
3' ss Score
11.8
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
Exon sequences
Seq C1 exon
ATTGAAATTAAAATGAAAAAGCCAGAGGCAGTGAGATGGGAAAAGCTAGAGGGACAAGGAGATGTGCCCGCCCCGAAACAGTTCACAGCAG
Seq A exon
ATGTAAAGAACATGTATCCCTCCTCGTCTCACTACACCAGGAACTGGGATAAACTGGTTGGTGAAATCAAAGAAGAAGAAAAGAACGAGAAGCTGGAAGGTGACGCAGCTTTAAACAAGTTATTTCAGCAGATCTACTCGGATGGTTCCGATGAAGTGAAACGCGCCATGAACAAGTCATTT
Seq C2 exon
ATGGAGTCTGGTGGTACAGTCTTGAGCACCAACTGGTCTGACGTAGGTAAAAGGAAAGTTGAAATCAACCCTCCTGATGATATGGAATGGAAACAGTACTAAATAAATCAGTTTGCTATCACTGTCTTACGTTTGTTCGAGTGCCCATTGTGTGCTTTATCACGTTCTTGAGTTTTAAGCAGTGTCTTTTGAAAGATTAAACAAACCTTTTTGCCTCTCTGTGCTTTAGAAATGATTTTCCTGCAAGTATTCTGAAGAGCGACAGTCACATCTTATCATTTCTGTCCGTAAGGATTTCACACACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012594-'20-25,'20-21,28-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=0.139 C2=0.477
Domain overlap (PFAM):
C1:
PF0496911=CS=PD(7.8=19.4)
A:
PF0500210=SGS=PU(58.5=78.7)
C2:
PF0500210=SGS=PD(39.0=94.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGAAACAGTTCACAGCAG
R:
AGCACAGAGAGGCAAAAAGGT
Band lengths:
246-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]