GgaEX6005828 @ galGal4
Exon Skipping
Gene
ENSGALG00000016946 | SUGT1
Description
suppressor of G2 allele of SKP1 homolog [Source:RefSeq peptide;Acc:NP_001025994]
Coordinates
chr1:165034517-165036009:-
Coord C1 exon
chr1:165035919-165036009
Coord A exon
chr1:165035607-165035788
Coord C2 exon
chr1:165034517-165035057
Length
182 bp
Sequences
Splice sites
3' ss Seq
CTAATGCTTCCATGTTTCAGACA
3' ss Score
6.59
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GTTGAAATAAAAATGAAGAAACCAGAAGCTGTAAGATGGGAAAAACTGGAGGGAGAGGGAGATTCTCTTAAGTTAAAGCAGTTTATACCAG
Seq A exon
ACACCCAGCACTTATATCCATCATCCTCTCACTATACAAGGAACTGGGACAAACTGGTAGTTGAAATCAAAGAAGAAGAAAAGAACGAGAAGCTAGAAGGAGATGCTGCTTTAAATAAACTCTTCCAGCAGATTTATTCAGATGGTACCGATGAAGTGAAACGTGCCATGAACAAATCGTTT
Seq C2 exon
ATGGAGTCTGGGGGCACAGTTCTGAGCACCAACTGGTCAGATGTTGGTAAAAGGAAGGTAGAAGTAAATCCTCCTGATGATATGGAATGGAAGAAATACTAATCCTATTTTTAATCTTTCACCATCTGTGTTGCCATAGTCATGTACTGGCCACTGTATATGAACATAGCATTCTTGGATTCAAAGCACTGAAATGTTCCCTTGGAAACAGGAATTGTCTTTGCATTTTGCGTGCTTTACAGATTTCTTCATCTGCAGATGTTAAAGATGTATTCAAGAGTGGAATCCTGTTTTCATCACCTCTGTCAAGTTTTTGGAAATTGAGTCAAATGCAGTCTAAATTTTCTACCACCTTTATCAGCTCTGCTCTTTGGGGATGGGATGATCTCTAACGGGCTGTTAAGGATCATTGCCTTACGCCTGATATTTCTGTTCAATAACTTATTAGACCTTGGCAACTTTGGGTAAAAATACTTTACAACAACAATGTTAAAATTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016946-'19-24,'19-22,20-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.066 C2=0.333
Domain overlap (PFAM):
C1:
PF0496911=CS=PD(9.8=19.4)
A:
PF0500210=SGS=PU(58.5=78.7)
C2:
PF0500210=SGS=PD(39.0=94.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGGGAGAGGGAGATTC
R:
TCCAAGGGAACATTTCAGTGCT
Band lengths:
253-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]