BtaEX6057276 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044027 | ITGBL1
Description
integrin, beta-like 1 (with EGF-like repeat domains) [Source:HGNC Symbol;Acc:HGNC:6164]
Coordinates
chr12:81980948-81992607:+
Coord C1 exon
chr12:81980948-81981098
Coord A exon
chr12:81987441-81987563
Coord C2 exon
chr12:81992461-81992607
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCTTTGTTTTAATGGTTTAGGTA
3' ss Score
8.17
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
TCAGGCCACGGTAAGTGTGACTGTGGCAGATGCAAATGTGATGAAGGATGGTTTGGTGACGCTTGCCAGTACCCAACCAACTGTGACCTGACCAAGAAAAAGAGTAACCAAATGTGCAAGAATTCTCAAGACATCATCTGCTCTAATGCAG
Seq A exon
GTACATGTCACTGTGGCAGGTGTAAATGTGATAATTCAGATGGAAATGGACTTGTCTATGGTAAATTTTGTGAGTGTGATGACAGAGAATGCATAGATGATGAAACAGAAGAAATATGTGGAG
Seq C2 exon
GTAAAGGCCACGGAAAGTGTTACTGTGGAAACTGTTACTGCCAGGCTGGTTGGCATGGAGATAAATGCGAATTCCAGTGTGACATCACCCCCTGGGAGAGCAAGCGAAGATGTACATCTCCAGATGGCAAAGTCTGCAGCAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044027-'2-4,'2-2,3-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=43.1),PF079748=EGF_2=PU(33.3=23.5)
A:
PF079748=EGF_2=PD(63.9=54.8),PF079748=EGF_2=PU(32.4=26.2)
C2:
PF079748=EGF_2=PD(64.7=44.0),PF079748=EGF_2=PU(30.8=24.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGTGACTGTGGCAGATGC
R:
CATCTTCGCTTGCTCTCCCAG
Band lengths:
251-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]