DreEX6036915 @ danRer10
Exon Skipping
Gene
ENSDARG00000040985 | itgbl1
Description
integrin, beta-like 1 [Source:ZFIN;Acc:ZDB-GENE-050522-410]
Coordinates
chr9:31971551-31976382:+
Coord C1 exon
chr9:31971551-31971697
Coord A exon
chr9:31974234-31974356
Coord C2 exon
chr9:31976242-31976382
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGATGGTTGTGGCCGACAGGCA
3' ss Score
4.71
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATCATGGGATATGCAACTGTGGCAAGTGTTTCTGTGATGAAAACTGGTTTGGTGAATCCTGTCAGTACGAGGAGGAGTGTTCGCTCTCCAGCAAAACCAGCAAAGACCTCTGCCGCAATGCTCAGGGTGTAGTTTGCTCCAATGCAG
Seq A exon
GCACCTGTCACTGCGGCAGCTGCATGTGCCACAATCCCGATGGGAAAAGCCTGATCAGCGGACGCTACTGCGAGTGTGATGACAGCGAGTGTTTGGATGAAGACTCTGGAGAAGTGTGTGGAG
Seq C2 exon
GCCATGGAAAGTGTTACTGTGGAAACTGTTACTGCTCTGCTGGTTGGCATGGAGATAAATGTGAATTCCAGTGTGCCATCAGCCCATGGGAGAGTAAGCGGAGATGCACATCTCCAGATGGCAAGATCTGCAGCAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040985-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(64.5=40.0)
A:
PF079748=EGF_2=PU(34.4=26.2)
C2:
PF079748=EGF_2=PD(62.5=41.7),PF079748=EGF_2=PU(30.8=25.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATATGCAACTGTGGCAA
R:
TCTCCGCTTACTCTCCCATGG
Band lengths:
247-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]