MmuEX6043329 @ mm10
Exon Skipping
Gene
ENSMUSG00000032925 | Itgbl1
Description
integrin, beta-like 1 [Source:MGI Symbol;Acc:MGI:2443439]
Coordinates
chr14:123827752-123843937:+
Coord C1 exon
chr14:123827752-123827898
Coord A exon
chr14:123840563-123840685
Coord C2 exon
chr14:123843797-123843937
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTTCCCTGCTTTAGGTA
3' ss Score
11.32
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCCACGGTAATTGTGACTGCGGCAAGTGCAAGTGTGATGTGGGATGGTCTGGGGAAGCTTGTCAGTACCCAACCAAGTGTGACCTGACCAAAAAAATCAGCAACCAGATGTGCAAGAACTCCCAAGATGTCATCTGCTCCAATGCAG
Seq A exon
GTACATGTCACTGTGGCAGGTGTAAGTGTGATAATTCAGATGGACATGGACTCATTTATGGTAAATTTTGTGAATGTGATGATAGAGAATGCATAGATGATGAAACAGAAGAAGTATGTGGAG
Seq C2 exon
GCCATGGGAAGTGTTACTGTGGAAACTGTTACTGTGAGGCTGGTTGGCATGGCGATAAATGCGAGTTCCAGTGTGACATCACCCCATGGGAAAGCAAGCGAAGATGCACATCTCCAGATGGCAAAGTCTGTAGCAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032925-'13-35,'13-33,14-35
Average complexity
S
Mappability confidence:
89%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(64.5=40.0),PF079748=EGF_2=PU(33.3=24.0)
A:
PF079748=EGF_2=PD(63.9=54.8),PF079748=EGF_2=PU(34.4=26.2)
C2:
PF079748=EGF_2=PD(62.5=41.7),PF079748=EGF_2=PU(30.8=25.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGGTAATTGTGACTGCGG
R:
TTGCTTTCCCATGGGGTGATG
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types