RnoEX0045272 @ rn6
Exon Skipping
Gene
ENSRNOG00000004516 | Itgbl1
Description
integrin subunit beta like 1 [Source:RGD Symbol;Acc:1560635]
Coordinates
chr15:110234718-110245677:+
Coord C1 exon
chr15:110234718-110234864
Coord A exon
chr15:110241678-110241800
Coord C2 exon
chr15:110245537-110245677
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTTCCCTGCTTTAGGTA
3' ss Score
11.32
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GCCACGGTACTTGTGACTGCGGCAAGTGTAAGTGTGATGTGGGATGGTCTGGGGAAGCTTGCCAGTACCCGACCAAGTGCGACCTGACCAAAAAAATAAGCAACCAGATGTGCAAGAACTCTCAAGATGTCATCTGCTCCAACGCAG
Seq A exon
GTACATGTCACTGTGGCAGGTGTAAGTGTGATAATTCAGATGGACATGGACTCATTTACGGTAAATTTTGTGAGTGTGATGATAGAGAATGCATAGATGATGAAACAGAAGAAATATGTGGAG
Seq C2 exon
GCCATGGGAAGTGTTACTGTGGAAACTGTTACTGCGAGGCTGGTTGGCATGGAGATAAATGCGAGTTCCAGTGTGACATCACCCCCTGGGAAAGCAAGCGAAGATGCACATCTCCAGATGGCAAAGTCTGTAGCAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004516-'2-6,'2-5,3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(64.5=40.0),PF079748=EGF_2=PU(33.3=24.0)
A:
PF079748=EGF_2=PD(63.9=54.8),PF079748=EGF_2=PU(34.4=26.2)
C2:
PF079748=EGF_2=PD(62.5=41.7),PF079748=EGF_2=PU(30.8=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTGACTGCGGCAAGTGTA
R:
ATCTTCGCTTGCTTTCCCAGG
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]