Special

GgaEX0024998 @ galGal4

Exon Skipping

Gene
Description
integrin, beta-like 1 (with EGF-like repeat domains) [Source:HGNC Symbol;Acc:HGNC:6164]
Coordinates
chr1:142683475-142690382:-
Coord C1 exon
chr1:142690236-142690382
Coord A exon
chr1:142687423-142687545
Coord C2 exon
chr1:142683475-142683615
Length
123 bp
Sequences
Splice sites
3' ss Seq
TATGACTTAAATGTTTGCAGGTA
3' ss Score
7.45
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCCATGGAAAGTGTGACTGTGGGAAGTGCAAATGTGATGAAGGCTGGTATGGTGAGGCTTGTCAGTATCCAACTACTTGCAATCTTACACGGAAGAAAAGCAATGAAATGTGTAAGAATTCTCAAGATATCATCTGCTCTGGTGCAG
Seq A exon
GTACATGTCAGTGTGGCAGGTGTAAATGTGTAAACTCAGGAGGAAGTGGACTGGTCTATGGCAAATTTTGTGAATGTGATGACAGAGAATGCATAGATGATGAGACCGAAGAGATTTGTACAG
Seq C2 exon
GCCATGGACAGTGTTACTGTGGAAACTGTTACTGTGAGGCTGGTTGGCATGGAGATAAATGTGAATTCCAGTGTGACATCACCCCTTGGGAGATCAAGAAAAGATGCACATCTCCAGATGGCAAAATCTGCAGTAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016867-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF079748=EGF_2=PD(64.5=40.0)
A:
PF079748=EGF_2=PU(34.4=26.2)
C2:
PF079748=EGF_2=PD(62.5=41.7),PF079748=EGF_2=PU(30.8=25.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGGAAAGTGTGACTGTG
R:
TTCTTGATCTCCCAAGGGGTG
Band lengths:
247-370
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]