HsaEX0032495 @ hg38
Exon Skipping
Gene
ENSG00000198542 | ITGBL1
Description
integrin subunit beta like 1 [Source:HGNC Symbol;Acc:HGNC:6164]
Coordinates
chr13:101567699-101579427:+
Coord C1 exon
chr13:101567699-101567845
Coord A exon
chr13:101575424-101575546
Coord C2 exon
chr13:101579287-101579427
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTCATGGTTTAGGTA
3' ss Score
9.57
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GCCATGGTAAGTGTGACTGTGGCAAGTGCAAGTGTGACCAGGGATGGTATGGGGATGCTTGCCAGTACCCAACTAACTGTGACTTGACAAAGAAGAAAAGTAACCAAATGTGCAAGAATTCACAAGACATCATCTGCTCTAATGCAG
Seq A exon
GTACATGTCACTGTGGCAGGTGTAAGTGTGATAATTCAGATGGAAGTGGACTTGTGTATGGTAAATTTTGTGAGTGTGACGATAGAGAATGCATAGACGATGAAACAGAAGAAATATGTGGAG
Seq C2 exon
GCCATGGGAAGTGTTACTGTGGAAACTGCTACTGCAAGGCTGGTTGGCATGGAGATAAATGTGAATTCCAGTGCGATATCACCCCCTGGGAAAGCAAGCGAAGATGCACGTCTCCAGATGGCAAAATCTGCAGTAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198542_MULTIEX1-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(87.0=40.0),PF079748=EGF_2=PU(33.3=24.0)
A:
PF079748=EGF_2=PD(63.9=54.8),PF079748=EGF_2=PU(34.4=26.2)
C2:
PF079748=EGF_2=PD(62.5=41.7),PF079748=EGF_2=PU(30.8=25.0)
Main Skipping Isoform:
ENST00000376180fB17799
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGTGGCAAGTGCAAGTG
R:
CGTGCATCTTCGCTTGCTTTC
Band lengths:
244-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development