MmuEX6043329 @ mm9
Exon Skipping
Gene
ENSMUSG00000032925 | Itgbl1
Description
integrin, beta-like 1 [Source:MGI Symbol;Acc:MGI:2443439]
Coordinates
chr14:124226974-124245801:+
Coord C1 exon
chr14:124226974-124227120
Coord A exon
chr14:124239785-124239907
Coord C2 exon
chr14:124245661-124245801
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTTCCCTGCTTTAGGTA
3' ss Score
11.32
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCCACGGTAATTGTGACTGCGGCAAGTGCAAGTGTGATGTGGGATGGTCTGGGGAAGCTTGTCAGTACCCAACCAAGTGTGACCTGACCAAAAAAATCAGCAACCAGATGTGCAAGAACTCCCAAGATGTCATCTGCTCCAATGCAG
Seq A exon
GTACATGTCACTGTGGCAGGTGTAAGTGTGATAATTCAGATGGACATGGACTCATTTATGGTAAATTTTGTGAATGTGATGATAGAGAATGCATAGATGATGAAACAGAAGAAGTATGTGGAG
Seq C2 exon
GAACATGTGTATGTGGTGAATGTTCTTGCCATGATGTTGATCCAACTGGGGACTGGGGAGACATTCATGGGGACACGTGTGAGTGTGATGAAAGGGACTGCAGAGCTGTTTATGATCGATACTCTGATGATTTCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032925-'3-9,'3-6,4-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(64.5=40.0),PF079748=EGF_2=PU(33.3=24.0)
A:
PF079748=EGF_2=PD(63.9=54.8),PF079748=EGF_2=PU(34.4=26.2)
C2:
PF079748=EGF_2=PD(66.7=54.2),PF079748=EGF_2=PU(40.0=29.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTAATTGTGACTGCGGCAA
R:
AACAGCTCTGCAGTCCCTTTC
Band lengths:
253-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: