BtaEX6057359 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018237 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr12:88236254-88244219:+
Coord C1 exon
chr12:88236254-88236350
Coord A exon
chr12:88241046-88241292
Coord C2 exon
chr12:88243948-88244219
Length
247 bp
Sequences
Splice sites
3' ss Seq
GTTGTGTTCTTTCACTGAAGTGG
3' ss Score
3.25
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATTGGAGTTCGGAAAGTGTTCCTGAAATACTGGCACGCCAGCCAGCTGAACGATCTGTGCCGCCAGCTGCAGAGAAAAATTATCACCTGCCAAAAAG
Seq A exon
TGGTCAGAGGATTTTTAGCCCGCCAGCACTTGCATCAGAAAAGGAGCATACGGCAGCAGGAGGTCACATCCATCAACAGCTTCCTGCAGGTCACAGAGGACCTGGGGCTGAAGACCTATGACGCCCTGGTTGTTCAGAACGCCTCGGACATCGCCCGCGAGAATGACCGGCTTCGGAACGAGATGAACGCTGCTTTCCACAGAGAGAAGTTGGAGGCCAGGGGCAAGCAGGAGGAAGGCTCCAAAAG
Seq C2 exon
AGCTGAAGACAAGAGCAGACCGAGGCGTCTCCACTGTAGCTCCATCTCAGTCCCCGCAGCAGTGGACGGCCTGACCCAGTCCCTGGCCGGTCCGCCCTCCAGGCCCCCTTCTCTGCACTCGGTGTTCAGCCTGGATGACGGCAGCGGCCTCCCGTCGCCACGGAAACAGCCTCCGCCCAAGCCAAAGAGGGACCCAGCCACGCGGCTGAGCGCCTCCTACGAGGCTGTGAGCGCCTGCCTATGGGCTGCAGCGAGGGACTCGGCGAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018237-'43-41,'43-40,44-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.386 C2=0.793
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(1.1=24.2),PF0061222=IQ=PU(42.9=27.3)
A:
PF0061222=IQ=PD(52.4=13.3),PF154391=NYAP_N=PU(7.8=37.3)
C2:
PF154391=NYAP_N=FE(23.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAGCTGAACGATCTGTG
R:
CATAGGCAGGCGCTCACAG
Band lengths:
302-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]