HsaEX6041025 @ hg19
Exon Skipping
Gene
ENSG00000041515 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:29822]
Coordinates
chr13:109772718-109779898:+
Coord C1 exon
chr13:109772718-109772814
Coord A exon
chr13:109777460-109777706
Coord C2 exon
chr13:109779630-109779898
Length
247 bp
Sequences
Splice sites
3' ss Seq
CCATGATCCTTCTATAAAAGTTA
3' ss Score
1.79
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATGGGAGTCCGAAAAGTGTTTCTAAAATACTGGCATGCTGACCAACTCAATGATTTGTGCCTACAGTTGCAGAGAAAAATTATAACCTGCCAAAAAG
Seq A exon
TTATCAGAGGATTTTTAGCACGCCAGCACCTGCTTCAGAGAATAAGCATCAGACAACAAGAGGTGACTTCTATCAATAGCTTTCTGCAGAACACAGAGGACATGGGGCTGAAAACCTACGATGCCCTGGTCATTCAGAATGCTTCAGACATTGCCCGGGAAAATGACCGGCTCCGTAGTGAAATGAACGCTCCCTACCATAAAGAGAAGTTAGAGGTCAGGAACATGCAAGAGGAAGGAAGCAAAAG
Seq C2 exon
AACCGATGACAAGAGTGGACCCAGGCATTTCCACCCCAGCTCCATGTCAGTCTGCGCGGCCGTGGATGGCCTGGGCCAGTGCCTCGTTGGCCCGTCCATCTGGTCTCCTTCGCTGCACTCGGTGTTCAGCATGGATGACAGCAGCAGCCTCCCGTCTCCACGGAAACAGCCCCCGCCCAAGCCAAAGAGGGACCCCAACACCCGGCTGAGTGCTTCCTATGAGGCTGTGAGCGCCTGCCTCTCCGCGGCCAGGGAAGCGGCCAACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041515-'40-39,'40-38,41-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.349 C2=0.659
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(1.1=24.2),PF0061222=IQ=PU(42.9=27.3)
A:
PF0061222=IQ=PD(52.4=13.3),PF154391=NYAP_N=PU(23.3=37.3)
C2:
PF154391=NYAP_N=PD(75.9=93.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCATGCTGACCAACTCAA
R:
GCCTCATAGGAAGCACTCAGC
Band lengths:
293-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)