RnoEX6056287 @ rn6
Exon Skipping
Gene
ENSRNOG00000016483 | Myo16
Description
myosin XVI [Source:RGD Symbol;Acc:621561]
Coordinates
chr16:84648682-84656949:-
Coord C1 exon
chr16:84656853-84656949
Coord A exon
chr16:84650651-84650879
Coord C2 exon
chr16:84648682-84648950
Length
229 bp
Sequences
Splice sites
3' ss Seq
GGTTGTATTCTTTTATGAAGTTA
3' ss Score
1.71
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
ATGGGCGTCCACAAAGTGTTCCTGAAGTACTGGCAGGTGGACCAGCTCGGTGACCTGTGGCTCCAGATGCAAAGGAAGATTGTAACTTGTCAGAAAG
Seq A exon
TTATAAGAGGGTTTCTAGCCCGCCAGCACTTACTTCAGAGAATGAGCATCAAGCAGCAAGAGGTTACATCCATCAAGAGCTTCTTACAGAGCACAGAGGACATGGCACTGAAAACCTATGATGCCCTGGTTATTCAGAACGCTTCTGACATTGCCCGGGAACATGATAGGCTCCGGAAGGAGGTCCATGCTGCCTACCACAGGAACAGACAAGAGGAAGGAACCAAGAG
Seq C2 exon
AGCTGAAGACCAGGGAGGATGCCGGCATGCCCATTCCAACTCGGTTCCCGTGCCCATGGCAGTGGACAGCCTTGCCCAGGCTCTCGCCGGCCCGTCCAGTCGGTCCCCATCACTGCACTCTGTGTTCAGCATGGATGACAGCACTGGCCTCCCGTCACCACGGAAACAGCCTCCACCCAAGCCAAAGAGGGACCCCAACACCCGGCTGAGTGCCTCCTATGAGGCTGTGAGCGCCTGCCTTTCGGCCACCAAGGATGCAGCCAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016483-'32-36,'32-35,33-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.299 C2=0.956
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(1.1=24.2),PF0061222=IQ=PU(42.9=27.3)
A:
PF0061222=IQ=PD(52.4=14.3),PF154391=NYAP_N=PU(6.5=32.5)
C2:
PF154391=NYAP_N=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCCACAAAGTGTTCCTGA
R:
GTGTTGGGGTCCCTCTTTGG
Band lengths:
294-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]