MmuEX6034258 @ mm10
Exon Skipping
Gene
ENSMUSG00000039057 | Myo16
Description
myosin XVI [Source:MGI Symbol;Acc:MGI:2685951]
Coordinates
chr8:10554588-10562317:+
Coord C1 exon
chr8:10554588-10554684
Coord A exon
chr8:10560124-10560352
Coord C2 exon
chr8:10562049-10562317
Length
229 bp
Sequences
Splice sites
3' ss Seq
GGTTGTGTTCTTTTATGAAGTTA
3' ss Score
3.23
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATTGGAGTACACAAAGTGTTCCTGAAGTACTGGCACGTGGACCAGCTCAGCGACCTGTGGCTCCAGCTGCAAAGGAAGATTGTAACTTGCCAGAAAG
Seq A exon
TTATAAGAGGATTTCTGGCACGCCAGCACTTACTTCAGAGAATGAGCATCAAGCAACAAGAGGTTACATCCATCAAGAGCTTCTTACAGAGCACAGAGGACATGGCACTGAAAACCTATGATGCCCTGGTCATTCAGAACGCTTCCGATATCGCCCGGGAACACGACAGGCTCCGGAAGGAGGTCCACACTGCCTACCACAGGAACAGACAAGAGGAAGGAACCAAGAG
Seq C2 exon
AGCTGAAGACCAAGGAGGATGCAGGCACGTCCACTCCAACTCCGTGCCGGTGCCCATGGTAGTAGACAGCCTCGCCCAGGCTCTCACCGGACCATCTACCCGGCCCCCATCATTGCACTCTGTGTTCAGCATGGATGACAGCACTGGCCTCCCATCACCACGGAAACAGCCTCCACCCAAGCCAAAGAGGGACCCCAACACCCGGCTGAGTGCCTCCTATGAGGCTGTGAGCGCCTGCCTTTCAGCTGCCAAGGATGCAGCCGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039057-'41-46,'41-43,42-46=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.299 C2=0.967
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(1.1=24.2),PF0061222=IQ=PU(42.9=27.3)
A:
PF0061222=IQ=PD(52.4=14.3),PF154391=NYAP_N=PU(6.5=32.5)
C2:
PF154391=NYAP_N=FE(23.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAGCTGCAAAGGAAGAT
R:
TGCATCCTTGGCAGCTGAAAG
Band lengths:
297-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types