DreEX6035105 @ danRer10
Exon Skipping
Gene
ENSDARG00000078582 | myo16
Description
myosin XVI [Source:ZFIN;Acc:ZDB-GENE-070912-470]
Coordinates
chr9:8135691-8142976:+
Coord C1 exon
chr9:8135691-8135787
Coord A exon
chr9:8135878-8136124
Coord C2 exon
chr9:8142606-8142976
Length
247 bp
Sequences
Splice sites
3' ss Seq
CATCTGTATGTGTGTTTCAGTAA
3' ss Score
7.62
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATGGGCAACAGTAAGGTTTTCTTGAGATACTGGCAGGCCGATCACCTTAATGACCGCTGCCATCAACTGCACAGGAAGATTATTATCTGTCAGAAAG
Seq A exon
TAATGCGTGGCTGGTTGGCCAGACAGCAGGTGCGTCGCAGGCTCACTTCTAGGAAACAGGAGCTCTGCAATGTCCAGCGGTTCCTGCAAGGAGCTGAGGACTTGGGTTTGCGCACTTATGACAACCTGGTCATTCAAAACGCAGCCGATATTGCTAGAGAGAACGACCGCCTGCGGGGTCACATCAGTGCTCCACCACTGGGAGAGCGACCAGAACCTGTGGGCAAAGAAGAAGATTCGCCTAAAAG
Seq C2 exon
GGTTGTTGAAAAAAGTGGGAGAGGTAATGATGTGGCCAACCGTGGGGGGAACCGACCAATTCGGCATTTTCGCTCCAGCTCTGTGCCTCTACCCCTGGTAATGGACAGCTTGGTACACTCCAGCATTGGGGCATCAATCAAAGCAGCCCTTCAGCCTACACCACATTCCACTGATGAAGGCAATGGAGGAAGCCTTTCCTCTCCACGAAAACAACCTCCTCCCAAACCCAAACGAGACCCTAATACACGTCTGAGTGCATCATATGAGGCAGTGAGTGCAGGCCTGAGTATTGCACCCAAAGACAGCCCTGCTGAGGGTCAAGCCTCTCCGTCGGGAAGCCCACCAAACACCCAGCTATCTCCTTCTGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078582-'37-42,'37-40,38-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.343 C2=0.933
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(1.1=24.2),PF0061222=IQ=PU(42.9=27.3)
A:
PF0061222=IQ=PD(52.4=13.3),PF154391=NYAP_N=PU(7.0=37.3)
C2:
PF154391=NYAP_N=FE(28.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTAATGACCGCTGCCAT
R:
GTCTCGTTTGGGTTTGGGAGG
Band lengths:
293-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]