GgaEX7001178 @ galGal4
Exon Skipping
Gene
ENSGALG00000016837 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr1:137685138-137691280:+
Coord C1 exon
chr1:137685138-137685234
Coord A exon
chr1:137688860-137689106
Coord C2 exon
chr1:137690973-137691280
Length
247 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTATGTTATGGTAGTTG
3' ss Score
5.27
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATAGGAATCCGAAAAGTGTTTCTTAAGTACTGGCAAGCTGACCATCTCAACGATTTGTGCCTTCAGCTTCAGAAGAAAATTATAACCTGCCAAAAAG
Seq A exon
TTGTGAGAGGATTTCTAGCTCGCCAGCGTGTGCTACAGAAGATGAGCATCAAACAGCAAGAGATCACCTCAGTCAAAGGCTTCTTGCAGAATGTTGAGGATATGGGGCTGAAAACATACGATGCCTTGGTCATTCAAAATGCTTCTGACATTGCTCGGGAAAATGACCGAATTCGCAATGAGATGAATGCTGCTTACCACAGGGAAAAGCTAGAGGCTAGAAATAGACCAGAAGAAGTCCACAAAAG
Seq C2 exon
AGCTGAAGACAAGGGTGGGAAGCTCCCCGAGGACGGCTTTGCTGGCTACCGTGCGCCGAAGCACTTTCACTCCAGCTCCGTGCCCGTCCCCATGGCTGTGGAAGGCTTGGTACATTCTGCGGCTGGGTCGTCCATCAGGTCCCCATCCCTGCACTCAGTGTTCAGCATGGAAGACAACAGCAGCCTGCCGTCGCCACGGAAACAGCCTCCTCCCAAACCCAAGCGGGACCCCAACACACGGCTGAGCGCTTCCTATGAGGCTGTCAGTGCTTGCTTGTCGGCGGCTTCTAAGGAGGCCGCTAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016837-'35-43,'35-42,36-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.337 C2=0.913
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(1.1=24.2),PF0061222=IQ=PU(42.9=27.3)
A:
PF0061222=IQ=PD(52.4=13.3),PF154391=NYAP_N=PU(7.6=37.3)
C2:
PF154391=NYAP_N=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTACTGGCAAGCTGACCAT
R:
GGTTTGGGAGGAGGCTGTTTC
Band lengths:
292-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]