HsaEX6041025 @ hg38
Exon Skipping
Gene
ENSG00000041515 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr13:109120370-109127550:+
Coord C1 exon
chr13:109120370-109120466
Coord A exon
chr13:109125112-109125358
Coord C2 exon
chr13:109127282-109127550
Length
247 bp
Sequences
Splice sites
3' ss Seq
CCATGATCCTTCTATAAAAGTTA
3' ss Score
1.79
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATGGGAGTCCGAAAAGTGTTTCTAAAATACTGGCATGCTGACCAACTCAATGATTTGTGCCTACAGTTGCAGAGAAAAATTATAACCTGCCAAAAAG
Seq A exon
TTATCAGAGGATTTTTAGCACGCCAGCACCTGCTTCAGAGAATAAGCATCAGACAACAAGAGGTGACTTCTATCAATAGCTTTCTGCAGAACACAGAGGACATGGGGCTGAAAACCTACGATGCCCTGGTCATTCAGAATGCTTCAGACATTGCCCGGGAAAATGACCGGCTCCGTAGTGAAATGAACGCTCCCTACCATAAAGAGAAGTTAGAGGTCAGGAACATGCAAGAGGAAGGAAGCAAAAG
Seq C2 exon
AACCGATGACAAGAGTGGACCCAGGCATTTCCACCCCAGCTCCATGTCAGTCTGCGCGGCCGTGGATGGCCTGGGCCAGTGCCTCGTTGGCCCGTCCATCTGGTCTCCTTCGCTGCACTCGGTGTTCAGCATGGATGACAGCAGCAGCCTCCCGTCTCCACGGAAACAGCCCCCGCCCAAGCCAAAGAGGGACCCCAACACCCGGCTGAGTGCTTCCTATGAGGCTGTGAGCGCCTGCCTCTCCGCGGCCAGGGAAGCGGCCAACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041515-'59-68,'59-67,60-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.349 C2=0.659
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(1.1=24.2),PF0061222=IQ=PU(42.9=27.3)
A:
PF0061222=IQ=PD(52.4=13.3),PF154391=NYAP_N=PU(8.4=37.3)
C2:
PF154391=NYAP_N=FE(24.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCATGCTGACCAACTCAA
R:
GCCTCATAGGAAGCACTCAGC
Band lengths:
293-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains