HsaINT0108343 @ hg38
Intron Retention
Gene
ENSG00000041515 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr13:109125112-109127550:+
Coord C1 exon
chr13:109125112-109125358
Coord A exon
chr13:109125359-109127281
Coord C2 exon
chr13:109127282-109127550
Length
1923 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
GTGTTTTGTTTCCCCCTAAGAAC
3' ss Score
6.32
Exon sequences
Seq C1 exon
TTATCAGAGGATTTTTAGCACGCCAGCACCTGCTTCAGAGAATAAGCATCAGACAACAAGAGGTGACTTCTATCAATAGCTTTCTGCAGAACACAGAGGACATGGGGCTGAAAACCTACGATGCCCTGGTCATTCAGAATGCTTCAGACATTGCCCGGGAAAATGACCGGCTCCGTAGTGAAATGAACGCTCCCTACCATAAAGAGAAGTTAGAGGTCAGGAACATGCAAGAGGAAGGAAGCAAAAG
Seq A exon
GTAAAGGCAGAGAGCATGCAATTTTAATTACCTTTGTGATTGGTTCAGTGGAGTCATGAAAATTCAAATAGCCCTTAATGCAGAGTTCAATCAAATATGACAGGAGTTGCAGGAACAGGCATGCGTGGTTTGTTATTCGAAATGGCAGCAGTCTAAAAAGATGCTTTCCTGTGCTGTCTTCTCACGAGTTCAAGGCTTTCTGTGTTCCTTCATTCATATGTGATGATGACTGCCTCTCCTGCCATGCTTGTGTCACTTAACTACCTCAAGCACACTCTAGTTCTAAAGCATTTACTGTTTCTGTATTAGCAAAAATATATAGCTTGGCTGTTGACATTTTTACACAAGCGTTACGGATATAAGGCTGGCTTATAGAAACTTCTGGAAATCTGACCCAAAAAATGGAGATACCACTCTGAAAACATGGAAGAAGTGAACTCAATAGATAGATTGTAAGTGTATTATATATCCCTGTGTAAACTGTCACGTCTCTCTTTACCAATAAAGCAAGCTTTGGGGAAAGCTTTGTATTTAAAAGTTCACTTTAGAGGCTTAGCTTAAAACAGAAATGTGACGATCACCTGGTCCCTCTCCATTTGATCACTCTCCTCTCTCTGTGAATGATGAAGACACCCGTGAATCACAACACCCCTAAGAGGGAGGGCAAGGAGCTGCTTCCTTTGGACCTTAATTCATCGTCAGGGAGATGTTTGTTTTGCTATAGAAACTTGGTAATATCTTGTTGTTTCTCACTGAAAATGACTCTCCTTTCCCATTTCTGCCGATGTCAATTTTTTTTTATTAAAGTGGAAATGGCAATGTGTATCTTGTTAATTAGCTTCAAATATCTCAGTGATTAAATACTGAAAAAAATCCCCTTTGTACAGAAAAAAAGACTGTAATTAAACATTACAGGAAAAACAAATTATCCACTGAGTGCCATGCTTTCATCTTCAGCTATTTCATTTTCTACATGGGCGGCTGGCTCTGCCTTGTGGTAGATTCTAGCCCTGTTGGTGTTCTGCCACAGAAAGATATAATTATAAAAACAAACGCTTGGAAACTCCTTGTAGAATGAATGCATTGGCATCTTGCTAGCACATGATTACGTTGACATGCGAAGCCAGAAGAAGTTTTTTTAAGCAAGATAACTATTAATTTTATATGACTTCCAAAATAATATTTATTATTTTCTCTGCTGGAACTAAACGGCCACCCCAATTTCTCAATTTGATTATGTATGTATTTTCCTGATACAAAATTAAGTGAAGAAGTATTTGTCTGTTTATTTACTGAATACCAGCAGTTTACTTGGCACTGGACAACCATATGGAGTCAAGGAGGAGAAATAATAGCTCTGCACATAATTAAATAATTTCTGGTAGAATTTAAGAGGCAAGAAAGAGAGTAATGGGGAGAAGGAGAACACTGAAATGTAAATTTCTGAGAGTTTTAAGTAGAGTCTATCCTCTTGCGAGGGGAAATGGTGATGAACTCCCAGCATTTGATGCATCAGTAACTCTCTATTAAGATGGATTTGCCAGAAATTATCATTCAGATTGAAATTCTGGTTTTTTGATTTGCTTAATAATCAGAGTGTGAAGAATTCATTCAGTGAGTGCCTGATGGAAAATGCGAAGGCCCTTAAGTAGTGTTGCGTTTGTGTGAGAATGTTTAAAAAGTAATCATGATGGATATCCCGCGGGCTCATGTGCTTTTCATCACAAAGCCGGAGCCAGAGGACGGGTGGCCTTCTCTGGACCAACTGGTCACCAGAGGGCTGCACACGTCCTCCAGCCACAGCAGGAAGGGCTGCTTGCCAAAAAGCCGTCATTATGTCTGCTTGAGCAGGTTCCTTGTTACCGGAATAATGCATCTGGGCCTCTCTGGCGTGGTGCTGTTTGTGTTTTGTTTCCCCCTAAG
Seq C2 exon
AACCGATGACAAGAGTGGACCCAGGCATTTCCACCCCAGCTCCATGTCAGTCTGCGCGGCCGTGGATGGCCTGGGCCAGTGCCTCGTTGGCCCGTCCATCTGGTCTCCTTCGCTGCACTCGGTGTTCAGCATGGATGACAGCAGCAGCCTCCCGTCTCCACGGAAACAGCCCCCGCCCAAGCCAAAGAGGGACCCCAACACCCGGCTGAGTGCTTCCTATGAGGCTGTGAGCGCCTGCCTCTCCGCGGCCAGGGAAGCGGCCAACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041515:ENST00000357550:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.349 A=NA C2=0.659
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=13.3),PF154391=NYAP_N=PU(8.4=37.3)
A:
NA
C2:
PF154391=NYAP_N=FE(24.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTGGTCATTCAGAATGC
R:
GCCTCATAGGAAGCACTCAGC
Band lengths:
351-2274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development