GgaINT0106607 @ galGal4
Intron Retention
Gene
ENSGALG00000016837 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr1:137688860-137691280:+
Coord C1 exon
chr1:137688860-137689106
Coord A exon
chr1:137689107-137690972
Coord C2 exon
chr1:137690973-137691280
Length
1866 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGTCTTCCGTGCTTTTTCAGAGC
3' ss Score
11.82
Exon sequences
Seq C1 exon
TTGTGAGAGGATTTCTAGCTCGCCAGCGTGTGCTACAGAAGATGAGCATCAAACAGCAAGAGATCACCTCAGTCAAAGGCTTCTTGCAGAATGTTGAGGATATGGGGCTGAAAACATACGATGCCTTGGTCATTCAAAATGCTTCTGACATTGCTCGGGAAAATGACCGAATTCGCAATGAGATGAATGCTGCTTACCACAGGGAAAAGCTAGAGGCTAGAAATAGACCAGAAGAAGTCCACAAAAG
Seq A exon
GTAAGATATCTTAGCTTTGAGAAAATATATTCTAGGTTGGATAGTAAGGAATTGAATCATTCTGTGATTTCCTTCCCTGCTCTTAAATTCACATAACTGACTTGAGCATACCTTGAAAATTGCAAGAGAACTTTCAAGTATGTATTCAATCCAGATCAATGCTAGACACTATTTTTCTTTGGAGCAGGTAATTAAGTCCAGAAGCATAAGGACACCAGTGTTACCTTATTCAAGGCAAACTGAGCTTTATAGGCTCTTATTCAAGCCTCTGAAGACTTTATTTTTTTTGCAGAAATTTTTAATTTTAAGAAAAATAGATTATAGTTGAACTTTCATCAAACAACTAAACAAAAGCAAAACTCATCTAACTGAGAATTTTAGCATGGGGAAATTGCCAAAATAATGAAAAACAGCTAAAAAGGCATTAGAATACAATAAAGGGCAGCCCAAGAAATTGTACAATGAACTTGATAGACTGTGAAGAGGATTCTTTCCCCTTATTTAAAAATAGATGAAAGCCTTTTTGTTTAGCACCCATTAGAGTTTTCAGGAGTACCTGTTTTACAAATCCAGCAAATGGTTGGAGAGCGTTTTCCCAGGAATGGAGTCCCAGATCTTTTTCTCTCAGATACCTGAACGGGCAAAGGTAGCATTTGCAGTTAAAAACAGGTATGTATCAAGAGCAGGAAAGCTTCTAATAACTTGCTGGGTATACAGATATTTACTTTTCCATAGGAACTTAATTCTCATCTGGAACAACTGCCTTTGCTTTCATTGCTTTTTTCAGTGACTTTATTAAAGTGAAAATGGCAGTGCATCTGCTTAATTAGCTTCAAATATCCCAGTGATTACATATTGGAGGAAATGCCTTTGTCAGAAAGACTGTAATTAAACATTACAGTGAAAACAAATTATCCACTGAGCACCACACTTTCATCCTTAGCTGTTTCATTTACTGCATGGGCAGCTGGCTAGATCCTGCGCATGAATTCCAGTCCTGCTGGTGATCTGCCATACAGAAATGCAATTTGAAAAAAAAAACAAATGCTTCGCAGTTTGTCTGTAAAATGATGGTATGGACATCTATCTAATAGGCAGCCACTCTAAGCTGAAAGGTTTCCAGCATTTTGATTTTTGGAAGAGTAAAATGTTTGAAGAATTTCTGTTAAAAATTGGTTTGTTGGAAGCAGCTGAAAAATATCATTTCTCTATATGAATTGAAATAGCAATAAATAAATAAATAAATGGAATAAGCAAAAGTCTAAAACTGTGATTGAAGTAACTAAGCATAATGTCATAGTTAATATCTTTAAAAGGATAGCTATCAAGTAAGCCTCCACAGGAGGATATGCAGATATCTAGCTGGAATCATTCAGGCAGCCACTGTAGCTGGTTAAAAGGGTCATTAATATTTTAAAGATTTGCATTATCTAAATAGAATTTATTGTTGTCTTTTCAGAAAATAGTGATAAAGGCTCAGCATTTGCTGCCTCAGTAACTTTCCATTAAAATGGATTTCCCAGAAATTATCATTCAGATTGGAAATGCGGCTTTTGATTGTGTGCAACAATCAAAGTGTGAACAATTCATTCACAGAGCGTCTGATCCACAATGTGAAACTGCTTAAGGAAAGCTGCATCTGTGTGAAAAGAGAGCCAGTGTCCCAATTTATCATGAAACAGGAAATGGAGGAAAGCTAGCAGCTTGATCTGGATTTGTTTGTCAGGAGATTACTACACACATCCCCTCTGCGCAGCAGGGGAGGCGGGAGGCTGTTTACCAAAAAGCTGTTGTTATGTTTGCATGAACAGGTTCATTGTTACCACTTGAATAATGCATCTGGGCCTGTCTTCCGTGCTTTTTCAG
Seq C2 exon
AGCTGAAGACAAGGGTGGGAAGCTCCCCGAGGACGGCTTTGCTGGCTACCGTGCGCCGAAGCACTTTCACTCCAGCTCCGTGCCCGTCCCCATGGCTGTGGAAGGCTTGGTACATTCTGCGGCTGGGTCGTCCATCAGGTCCCCATCCCTGCACTCAGTGTTCAGCATGGAAGACAACAGCAGCCTGCCGTCGCCACGGAAACAGCCTCCTCCCAAACCCAAGCGGGACCCCAACACACGGCTGAGCGCTTCCTATGAGGCTGTCAGTGCTTGCTTGTCGGCGGCTTCTAAGGAGGCCGCTAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016837:ENSGALT00000027192:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.337 A=NA C2=0.913
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=13.3),PF154391=NYAP_N=PU(7.6=37.3)
A:
NA
C2:
PF154391=NYAP_N=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGTCAAAGGCTTCTTGCA
R:
TCCATGCTGAACACTGAGTGC
Band lengths:
352-2218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]