MmuINT0103989 @ mm10
Intron Retention
Gene
ENSMUSG00000039057 | Myo16
Description
myosin XVI [Source:MGI Symbol;Acc:MGI:2685951]
Coordinates
chr8:10560124-10562317:+
Coord C1 exon
chr8:10560124-10560352
Coord A exon
chr8:10560353-10562048
Coord C2 exon
chr8:10562049-10562317
Length
1696 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GTGTTTTGTTTTCCCTTAAGAGC
3' ss Score
7.11
Exon sequences
Seq C1 exon
TTATAAGAGGATTTCTGGCACGCCAGCACTTACTTCAGAGAATGAGCATCAAGCAACAAGAGGTTACATCCATCAAGAGCTTCTTACAGAGCACAGAGGACATGGCACTGAAAACCTATGATGCCCTGGTCATTCAGAACGCTTCCGATATCGCCCGGGAACACGACAGGCTCCGGAAGGAGGTCCACACTGCCTACCACAGGAACAGACAAGAGGAAGGAACCAAGAG
Seq A exon
GTAAGGTCCATCTGTAACCTTACTTACCTACAAGATGAGTCCTGGGAGTCAGGCGCTTCTGATAGCCTTTAACACAAATCACAACTGAAGAGAGAATGGCTGGGGAACAGGCCGTGTCAGCCCAGACATTCCAGCAATCTCAAGGTTGCTTTCCTGGGTGATCCCCTCATGGAACACAATCCCCACGTGTAAGTTTAGTCACATAAAAATAACATTGTTCCATTAGCCTTGTTGATGTTACTTAAGCATTACACAAAGCTCAGAGCTAGCAAAATCAGCTAGCAAGACATGTAACGTTCTTGTGAGGTACAAGGCATATAAGGCTGGCTAATAGAAATTTCTGGAAACCTGTCTGAAGAATTCAGACACCACTTTGAAAATGTAAAAGTGCTGAATAAACCCCTATGTATGAGGCTCAAGCCTGAGGAGGACAGAACCAGGCTCCTTGCACAGGCCTTCATGACTAGGTAGCTGTCAGGTTTTGCTAAAATCTGGGGAACCTCCCATTTCTCTCTGAAAATGACTCTCTCCTGCCATCACTGCCTGCGTAGAATGATTTTGTTGCTGTTGTTAAAGTGGAAATGGCTAGGTGTCTTTGCTAATTAGCCTCCAATATCTTAGTGATTAAATACTGGAAAAAAAATCTTCTTTTGTACAGAAAGCGGTAATTAAGCATTACAGAGGAAACAAGTCATTCACCAGGCAGCCTCGCTTCATCCTCCGTGACTTCATTTTCTACATGGGCAGCCAGCTCGCATGCTGCTGGTTTCCAGCCCTGTGGATGCTCTGACACTCACAGATATAATTATGAAGCAGATGAGAAGAAACCCGTGGTGAAGGGAACCCACCAGTGTCTCACAAGATTCCCCCTGCCCATGAAGGCAGAAAGAAAAGCGTGAAACAAGCTGACTAACTACTCATTCTCAATGGCTTCCCAAAGCACATTTATCATTTTCCCTACTGGAACTAAACAGCCATTCCAATTCCACCATTTGATTATGTGTTTTATTTGCCCGATATAAAATTAAGTAAAGAAATGTGTGCCTGCTATTTGTTGATACCAGTTCTCTCAGTACCAGGCAACTGTGCAGAGTCACAAGAAGAATCATAATTCCATACGTAATTAGTAATTGCTGGTGAGATTAGATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAATGCCAAACTGGATTTACCTTGTTTGGTGTGGAGTGTGCCCGTCTACCTGACAACAGAACGGTGATGAGCCCTGCACACTGGCTGCAACACTAACTCTCTATTAAGATGGGTTTCCCAGAAATTATCATTCAGATTGAAATTCTGCCTTTTTCATTTGCTTAAGAATCAGACTGTGAAAAATCCATTCTAGGGGATGGCTGATGGGAAGCGTGAAGCCCTTTAAGTAGCTGGAGCATTACTGGGGGAGCCCTGAAAGGAACCACGATAGACATCCCCAGTGTTCCAGCAGAGCCAGGCAGGCCTGGGCAGCAACCTCTGGGTGAGCTAGGTGCTAAAAACCGAATGCAGATTTTCCAGCAAGGCCAGCTAGAAAGGGCCCTTGCCAAGGAACTCTCTTTGTGTCAGGGGAACGGGCTCATCTCTGTCACCTGAATGACACACCTGGGCCTCTGTGCTCTGTGGCTGTTTGTGTTTTGTTTTCCCTTAAG
Seq C2 exon
AGCTGAAGACCAAGGAGGATGCAGGCACGTCCACTCCAACTCCGTGCCGGTGCCCATGGTAGTAGACAGCCTCGCCCAGGCTCTCACCGGACCATCTACCCGGCCCCCATCATTGCACTCTGTGTTCAGCATGGATGACAGCACTGGCCTCCCATCACCACGGAAACAGCCTCCACCCAAGCCAAAGAGGGACCCCAACACCCGGCTGAGTGCCTCCTATGAGGCTGTGAGCGCCTGCCTTTCAGCTGCCAAGGATGCAGCCGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039057:ENSMUST00000207477:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=NA C2=0.967
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=14.3),PF154391=NYAP_N=PU(6.5=32.5)
A:
NA
C2:
PF154391=NYAP_N=FE(23.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCCAGCACTTACTTCAGA
R:
TCCATGCTGAACACAGAGTGC
Band lengths:
346-2042
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types