RnoINT0096860 @ rn6
Intron Retention
Gene
ENSRNOG00000016483 | Myo16
Description
myosin XVI [Source:RGD Symbol;Acc:621561]
Coordinates
chr16:84648682-84650879:-
Coord C1 exon
chr16:84650651-84650879
Coord A exon
chr16:84648951-84650650
Coord C2 exon
chr16:84648682-84648950
Length
1700 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
GTGTTCTCTTTTCCCTTAAGAGC
3' ss Score
7.89
Exon sequences
Seq C1 exon
TTATAAGAGGGTTTCTAGCCCGCCAGCACTTACTTCAGAGAATGAGCATCAAGCAGCAAGAGGTTACATCCATCAAGAGCTTCTTACAGAGCACAGAGGACATGGCACTGAAAACCTATGATGCCCTGGTTATTCAGAACGCTTCTGACATTGCCCGGGAACATGATAGGCTCCGGAAGGAGGTCCATGCTGCCTACCACAGGAACAGACAAGAGGAAGGAACCAAGAG
Seq A exon
GTAAGCTCAATCGATGTCTTTGTCTGTAACCCTAAATACCTTCAAGATAGGCCCTGGGAGTTAGGGGGACTTCTGATAGCCCTTAACACAAAGCACAACTGAATGGAGGAAAGAGAATGGCTGGGTGGCTGGGGAATAATGCCTGCATGGTATATTAGGCCAGACACCCTAGCAATCACAGGGTTGCTTTTCCTGGGAGGTTCCTTCATCAAAAACAGTCTCCACCTGTAAGTTTAAAAATAACATTGTTTCTTCAGCCTCCTTGATGTTTCTTAAGCCTCACACAAAGCCCTGAGCTAGCAGAATCAGCTAGCAAGACCTTTAACGTGCTTGTGAGGTGCAAGGCATATAAGGCTGGCTAACAGAACATCTGAAAACCTGGCCAAAGAATTCAGACACCACTTTGAAACCATAAAAGTGGTAAATAAATAGGAGTCCCTGTATGTGAGGTGCATGGCCAGGAAAGACAGAATCAGACTCGTTGCACAGACCTTCGTGATTACATAGCTGTCAATTCTTACTAAAGACCTTGGGAACTTCTTGTTTCTCTCTAAAAATGATTCTCCCTTGCCATCACTGCCTGTGTGGAATGAGTCTGTTGCTGTTGTTGAAGTGGAAATGGCTATGGGTCTTTGCTAATTAGCTTCCAATATCTTAGTGATTAAACACTGGAAAAAATTCTTTTGTACAGAAAACTGTAATTAAACCTCACAGAGGGAACAAATCATTTGCCGAGCAGCCTCGCTTCATCCTCAGTGACTTCATTTTCTACATGGGCAGCCAGCTCGCATGCCGCTGGTCTCCAGCCCTGTGGATGCTCTGACACACACAGATATAATTATGAAACAGATGAGAGGAAACTCCTGGTGAAGGGAACTCACCAGCGTCTCACACAATTACCCCCCGACACGTGAAGGCAGAAAGGAAACCGTGAAAGGAGGACGACTACTCTCTCTCAGTGGCTTCCCAAATCATATTTATCATTTTCCCTACTGGAGCTAAACAGCCATTGCAATTCCTCGATTTGATTAGGTTTTATTTGCCTGATATAAAATTGTGTCAAGAAAACGTCCGCCTGCTATTTGTTGATACCAGCAGTTCGCTCGGCACCAGGCAACTGTGCAGAGTCACAGGAAGAATCATAATTCCATACATAATTAGTAATTGCTGGTGAGACTAGATGAGGAGAGAGGGAGATGGGGGGGCAAACTGTGAATTTCCCTTGTTTGGTGCAGAGCATGCCCGTCTTCTTGACAAGTCGGGGTGACGAGCTCTGCATACTGGCTGCAACACTAACTCTCTATTAAGATGGATTTCCCAGAAATTATCATTCAGATTGAAATTCTGCCTTTTTCATTTGCTTAAGAATCAGACTGTGAAAAATTCAGTCTGGGGATGGCTGATGGGAAACATGAAGCCCTTTAAGTAGCTGGAGCATTGAGCATTGCTGGGGGGAATCCTGAAAGGAACCATGATGGATATCCCCCAGTGCTCCAGCAGGGTCCAGGCGGGCCTGGGTAGCAATCCCTGGGTGAGCAGACTGCTAAGAACTGGACCCAGATTTTCCAGCAAAGCCAGCTAGAGAGGCTCCTTGCCAAGGAACTCTCTCTGTGTCAGGGTAGCTAGCGGGCTCATCAGGGTCACCTGAATGGCACACCTGGGCCTCCATGCTCTGTGACTGTGTTCTCTTTTCCCTTAAG
Seq C2 exon
AGCTGAAGACCAGGGAGGATGCCGGCATGCCCATTCCAACTCGGTTCCCGTGCCCATGGCAGTGGACAGCCTTGCCCAGGCTCTCGCCGGCCCGTCCAGTCGGTCCCCATCACTGCACTCTGTGTTCAGCATGGATGACAGCACTGGCCTCCCGTCACCACGGAAACAGCCTCCACCCAAGCCAAAGAGGGACCCCAACACCCGGCTGAGTGCCTCCTATGAGGCTGTGAGCGCCTGCCTTTCGGCCACCAAGGATGCAGCCAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016483:ENSRNOT00000022742:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=NA C2=0.956
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=14.3),PF154391=NYAP_N=PU(6.5=32.5)
A:
NA
C2:
PF154391=NYAP_N=FE(23.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCAGCACTTACTTCAGAG
R:
TCCATGCTGAACACAGAGTGC
Band lengths:
345-2045
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]