BtaINT0097744 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018237 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr12:88241046-88244219:+
Coord C1 exon
chr12:88241046-88241292
Coord A exon
chr12:88241293-88243947
Coord C2 exon
chr12:88243948-88244219
Length
2655 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TGTTCATTCTCTCCCCACAGAGC
3' ss Score
12.91
Exon sequences
Seq C1 exon
TGGTCAGAGGATTTTTAGCCCGCCAGCACTTGCATCAGAAAAGGAGCATACGGCAGCAGGAGGTCACATCCATCAACAGCTTCCTGCAGGTCACAGAGGACCTGGGGCTGAAGACCTATGACGCCCTGGTTGTTCAGAACGCCTCGGACATCGCCCGCGAGAATGACCGGCTTCGGAACGAGATGAACGCTGCTTTCCACAGAGAGAAGTTGGAGGCCAGGGGCAAGCAGGAGGAAGGCTCCAAAAG
Seq A exon
GTAAAGGCGGGCGGTGTCCAGCTCCCATCACCCACGTGGTTCATCAGGGTGGGGGGAGCAAGAAAATGCCCATAGTGCTCTTCAAAATATGGTTTTTTTATATGGACCATTTTTAGAGTCCTCACTGAGTTTGTTGCAATATTGCTTCTGTTTCATATTTTGGTATTTTGGCCACGAAGCCCGTGGGATTTCAGCTCCCTCACCAGGGATCAGACCCACACCCCGTGGCTTGGGAAGGCGAAGTCTTAACCACCGGACCCCAAGGAAGTCCCAGTGCTGATAGCTCTTAATGTAAAGTTCAATCACACGTGACCGTAGGGAGAAGAACACTCATATACGCATGCCCACTGTGTAAAGTGAAACCTCCTGACATCTGAAAGGATACATTGCCTGGGCTTTCCTTCTAGAAAACGGATGCTCTGTGTGTTAGTTCAGGCCACGTGAAATAATTGCTACACTAATGCCTGTATCATTTGCCACCTCCAGCACCAAGATTTTTTTTTTTTAATTTTTTATTTCGTTCTTTATCAGCCGTGCTGGGTCTTTGCTGCTGCACTGGTTTTCTCTGGTTTCCGTGAGTGGGTATTGAGAGCTACCCTCGAGGTGCAGTGAGTGGGCTTCTCATCGTGGTGGGTCCTCTTGTTGGGAAGCACAGGATCTAGGGCTCTGGCTCAGTAGTTATGGAGCCCAGGCCATGTTGTCCCACAGCATGTGGGATAATCTGGGACTGGGGACCGAACCCGTGCCCTGTGCATTGGCAGATGAATTCTTTACCACTGGGCCACCAGGGAAGTCCCTCACCAACCGAGTTTTAAGTCATCTAATATTTCCATCTTAGCAAAAACGTATAGCTGGAATCTCGACATCTTTACGCAAGTGTCATATATATAAATAAGGCTGACTCACAGAAACGTCTGAAAGTTTGACCCCCAAAATGGAGAAGCCACTCTAAAAACACAAAAGCAGTGAGCTTGATCGGTGGTGGCCTGTATTATATTTCCCTTAGGAAGCTCGCTCATCTTCTTTGCCAGTAAGGAAAGCTTCAGGGAAAGCTTTCAGAGTTCACGGTGGATGCTGAGCTGGAAATAAACAAGTGAAGAAATCCAGGTCCTTCTCCACGTCACCGCTCTTGTCTCCCTGTGACAAATGACGATACTCATGCCTGATAGCCCTCCCTGGTCCTTTCCATCCTAATTTGCTGTCAGGAAGATTGTTTTTCCCCAGACTTTTAACTGTTTTATTTTGTATTTGGGACATAGACGATTATCAGTGTATGGTAGTTTCAGGCGAACAGCAGTGAAGGGACTCAGCCATACATATACATGTATCCATTCTCCGCAGCCCCCTCCCATCCAGGCTGCCACGTGACACTGAGCTCCACGTGCTCTACAGTGGGTCCTTGTTGCTCTCCACTTTGAATATAGCAGTGTGTACATGACCTTCCCAAAGTCTCAGGGAGGTACTTTCCCATAGGAACACAGCAATATCTAGTTGCTCCTCACTGCAGATGACCGCCCCCCTTGGCCTTGACTGCAATGTCAAATGATTTTTTATTAAAGTGGAAATGGTGGTGTGTCCCTCACTAATTAGCTTCAACTATCTCAGTGATTAAATGCTGAAAAAATTCCCTTTGTACGGAAAACTGTAATTAAACATTACAGGGAAAACAAATTATCCTCCGAGTGCCACACTTTCATCTTCAGCTCGTTCATTTCCTACACGGGCGTCTGATCTGCCCGGCAGTGGATCCCAGCCCTGTTGGTTCTCTGCCACACAAAGATATAATTATAAAAACAAATGCTCCGAGACTCCTTGTGAAATGAACGCGTTGGCATCTCCCTCGCACACGATTACATTGACATGTGAAGCCAGAAGGAAATTTTTTTTTAACCAGATAACTATTAATTTTATATGACTTCCAGAATAATATTTATTATTTTCTCTGCTGGAGCTAAACAGCCACCCCAATTTCTCAATTTCATCATGTATTCATTTGCCTGCTATAAAATTAAGTGAAGAAGTAGTTGTCTATTTATTTATTGAATACCAGCAGTTCACTTGGCATTGGGCAACCAGATGGAGCCACAGAAGAAAAATAACAATTCTGCACATAATTAAATAATTGCTGATGGAATTTAAATGGCAAGGGAAAGAGAGAGAGAGACAGGGAAAATGAAAATCTTTGATCATTGTAAGTATATACTCTTTTGCAAGGATGAGCAGTGATGAACTCCCAGCAACTGATGCATCAGTAACTCTCTATTAAGATGAACTTCCCAGAAATTATCATTCAGATTGAAATTCTGGTTTTTTGATTTGCTTAATAATCGGAGTGTGAAAAATTGACTCAGCGAATGCCTGATGGCAAATGTGGCACTCCTTGAGACGTCTTGGGTTTGGGTGAGATGTTTTTCTGAAGTAATCATGATGAGATTCGCACGTGCTTATCTGTCGGGAAGCGGGGCTGGAAGGATGGAGTGGCTGCCTCTAGAGGCCCTGGGTACCGGAGCCCCGCAGGCATCCTCCAGCCTCGCGGGAAGGCTGATTTACCCAAGAGCCGAGATGACGTGTGCTTGAGCCGCTTCACTGCTACCATCTGAACGATGGCTCTGGGTCCCTCCGCTGGGGCTCTGTGTGTTCATTCTCTCCCCACAG
Seq C2 exon
AGCTGAAGACAAGAGCAGACCGAGGCGTCTCCACTGTAGCTCCATCTCAGTCCCCGCAGCAGTGGACGGCCTGACCCAGTCCCTGGCCGGTCCGCCCTCCAGGCCCCCTTCTCTGCACTCGGTGTTCAGCCTGGATGACGGCAGCGGCCTCCCGTCGCCACGGAAACAGCCTCCGCCCAAGCCAAAGAGGGACCCAGCCACGCGGCTGAGCGCCTCCTACGAGGCTGTGAGCGCCTGCCTATGGGCTGCAGCGAGGGACTCGGCGAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018237:ENSBTAT00000024275:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=NA C2=0.793
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=13.3),PF154391=NYAP_N=PU(7.8=37.3)
A:
NA
C2:
PF154391=NYAP_N=FE(23.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development