GgaINT0106607 @ galGal3
Intron Retention
Gene
ENSGALG00000016837 | MYO16
Description
NA
Coordinates
chr1:142602055-142604255:+
Coord C1 exon
chr1:142602055-142602081
Coord A exon
chr1:142602082-142603947
Coord C2 exon
chr1:142603948-142604255
Length
1866 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGTCTTCCGTGCTTTTTCAGAGC
3' ss Score
11.82
Exon sequences
Seq C1 exon
AAATAGACCAGAAGAAGTCCACAAAAG
Seq A exon
GTAAGATATCTTAGCTTTGAGAAAATATATTCTAGGTTGGATAGTAAGGAATTGAATCATTCTGTGATTTCCTTCCCTGCTCTTAAATTCACATAACTGACTTGAGCATACCTTGAAAATTGCAAGAGAACTTTCAAGTATGTATTCAATCCAGATCAATGCTAGACACTATTTTTCTTTGGAGCAGGTAATTAAGTCCAGAAGCATAAGGACACCAGTGTTACCTTATTCAAGGCAAACTGAGCTTTATAGGCTCTTATTCAAGCCTCTGAAGACTTTATTTTTTTTGCAGAAATTTTTAATTTTAAGAAAAATAGATTATAGTTGAACTTTCATCAAACAACTAAACAAAAGCAAAACTCATCTAACTGAGAATTTTAGCATGGGGAAATTGCCAAAATAATGAAAAACAGCTAAAAAGGCATTAGAATACAATAAAGGGCAGCCCAAGAAATTGTACAATGAACTTGATAGACTGTGAAGAGGATTCTTTCCCCTTATTTAAAAATAGATGAAAGCCTTTTTGTTTAGCACCCATTAGAGTTTTCAGGAGTACCTGTTTTACAAATCCAGCAAATGGTTGGAGAGCGTTTTCCCAGGAATGGAGTCCCAGATCTTTTTCTCTCAGATACCTGAACGGGCAAAGGTAGCATTTGCAGTTAAAAACAGGTATGTATCAAGAGCAGGAAAGCTTCTAATAACTTGCTGGGTATACAGATATTTACTTTTCCATAGGAACTTAATTCTCATCTGGAACAACTGCCTTTGCTTTCATTGCTTTTTTCAGTGACTTTATTAAAGTGAAAATGGCAGTGCATCTGCTTAATTAGCTTCAAATATCCCAGTGATTACATATTGGAGGAAATGCCTTTGTCAGAAAGACTGTAATTAAACATTACAGTGAAAACAAATTATCCACTGAGCACCACACTTTCATCCTTAGCTGTTTCATTTACTGCATGGGCAGCTGGCTAGATCCTGCGCATGAATTCCAGTCCTGCTGGTGATCTGCCATACAGAAATGCAATTTGAAAAAAAAAACAAATGCTTCGCAGTTTGTCTGTAAAATGATGGTATGGACATCTATCTAATAGGCAGCCACTCTAAGCTGAAAGGTTTCCAGCATTTTGATTTTTGGAAGAGTAAAATGTTTGAAGAATTTCTGTTAAAAATTGGTTTGTTGGAAGCAGCTGAAAAATATCATTTCTCTATATGAATTGAAATAGCAATAAATAAATAAATAAATGGAATAAGCAAAAGTCTAAAACTGTGATTGAAGTAACTAAGCATAATGTCATAGTTAATATCTTTAAAAGGATAGCTATCAAGTAAGCCTCCACAGGAGGATATGCAGATATCTAGCTGGAATCATTCAGGCAGCCACTGTAGCTGGTTAAAAGGGTCATTAATATTTTAAAGATTTGCATTATCTAAATAGAATTTATTGTTGTCTTTTCAGAAAATAGTGATAAAGGCTCAGCATTTGCTGCCTCAGTAACTTTCCATTAAAATGGATTTCCCAGAAATTATCATTCAGATTGGAAATGCGGCTTTTGATTGTGTGCAACAATCAAAGTGTGAACAATTCATTCACAGAGCGTCTGATCCACAATGTGAAACTGCTTAAGGAAAGCTGCATCTGTGTGAAAAGAGAGCCAGTGTCCCAATTTATCATGAAACAGGAAATGGAGGAAAGCTAGCAGCTTGATCTGGATTTGTTTGTCAGGAGATTACTACACACATCCCCTCTGCGCAGCAGGGGAGGCGGGAGGCTGTTTACCAAAAAGCTGTTGTTATGTTTGCATGAACAGGTTCATTGTTACCACTTGAATAATGCATCTGGGCCTGTCTTCCGTGCTTTTTCAG
Seq C2 exon
AGCTGAAGACAAGGGTGGGAAGCTCCCCGAGGACGGCTTTGCTGGCTACCGTGCGCCGAAGCACTTTCACTCCAGCTCCGTGCCCGTCCCCATGGCTGTGGAAGGCTTGGTACATTCTGCGGCTGGGTCGTCCATCAGGTCCCCATCCCTGCACTCAGTGTTCAGCATGGAAGACAACAGCAGCCTGCCGTCGCCACGGAAACAGCCTCCTCCCAAACCCAAGCGGGACCCCAACACACGGCTGAGCGCTTCCTATGAGGCTGTCAGTGCTTGCTTGTCGGCGGCTTCTAAGGAGGCCGCTAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016837:ENSGALT00000036558:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=NA C2=0.899
Domain overlap (PFAM):
C1:
PF154391=NYAP_N=FE(2.2=100)
A:
NA
C2:
PF154391=NYAP_N=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAGACCAGAAGAAGTCCACAA
R:
CTTCATTAGCGGCCTCCTTAGA
Band lengths:
334-2200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]