BtaEX6058161 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017650 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr15:24584124-24586018:-
Coord C1 exon
chr15:24585880-24586018
Coord A exon
chr15:24585424-24585537
Coord C2 exon
chr15:24584124-24584167
Length
114 bp
Sequences
Splice sites
3' ss Seq
TATTCCCCTTTCTTATCAAGACT
3' ss Score
4.19
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
Exon sequences
Seq C1 exon
TATCTTTCAGAATAAACACTTCTGAGGACTTCTTGCTGGAAGTACAGCTGAGGGCCCGGCAAGACTGGCTGCTGGTGTGCCATGAGGGCTGGAGCTCTGCCCTGGGGGCACGTGTCTGCAGGAGCCTCGGACATCTTAG
Seq A exon
ACTCACTCACCACAAGGCGGTGAACCTGTCTGATGTCAGGCTCAACAGTTCCAGGGAGTTTGCTCAGCTCTCTCCTAGACTGGAAGGCTTCCCGGAGGAGGTGTGGCAGCCTAG
Seq C2 exon
GGACCGCTGTGCTTCTGGTCAGATCGTCTCCCTCAAGTGTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017650-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(39.8=83.0)
A:
PF154941=SRCR_2=FE(38.8=100)
C2:
PF154941=SRCR_2=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGAATAAACACTTCTGAGGACT
R:
CGGAACACTTGAGGGAGACGA
Band lengths:
178-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]