HsaEX6004749 @ hg19
Exon Skipping
Gene
ENSG00000166682 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:14908]
Coordinates
chr11:113566122-113568140:-
Coord C1 exon
chr11:113568005-113568140
Coord A exon
chr11:113567580-113567693
Coord C2 exon
chr11:113566122-113566165
Length
114 bp
Sequences
Splice sites
3' ss Seq
TATTCCCTTCTTCTGCCAAGACT
3' ss Score
1.86
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
TATCTTTCAGAATAAACAGCGAAGACTTCTTGCTGGAAGCGCAAGTGAGGGATCAGCCACGCTGGCTCCTGGTCTGCCATGAGGGCTGGAGCCCCGCCCTGGGGCTGCAGATCTGCTGGAGCCTTGGGCATCTCAG
Seq A exon
ACTCACTCACCACAAGGGAGTAAACCTCACTGACATCAAACTCAACAGTTCCCAGGAGTTTGCTCAGCTCTCTCCTAGACTGGGAGGCTTCCTGGAGGAGGCGTGGCAGCCCAG
Seq C2 exon
GAACAACTGCACTTCTGGTCAAGTTGTTTCCCTCAGATGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166682-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(39.8=84.8)
A:
PF154941=SRCR_2=FE(38.8=100)
C2:
PF154941=SRCR_2=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTTCAGAATAAACAGCGAAGACT
R:
AGAGCATCTGAGGGAAACAACT
Band lengths:
178-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)