DreEX0080015 @ danRer10
Exon Skipping
Gene
ENSDARG00000087717 | tmprss5
Description
transmembrane protease, serine 5 [Source:ZFIN;Acc:ZDB-GENE-131121-184]
Coordinates
chr15:18233049-18235737:-
Coord C1 exon
chr15:18235602-18235737
Coord A exon
chr15:18234618-18234731
Coord C2 exon
chr15:18233049-18233092
Length
114 bp
Sequences
Splice sites
3' ss Seq
CAACTAGTCTCTCTTTTTAGATT
3' ss Score
8.59
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
TGTTTTACAGGATCAGTGCTGAGAACTCACTTCTGGAGATCCAGCTGGAGAAGCTGCAGACGTGGCTGCCTGTTTGTTTCGAGAGGTGGAACTCGTCTCTGGGAACACTCGTATGTCGACAGCTGGGCTATCTGAG
Seq A exon
ATTATCAAAGCACAAGGGAGTGAATCTGACTGATATCGGGCCGAATTATACAGATGGATTTGTCCAAATCACCTCAGAATACCAAAGCAATTTGGAGAGCTTATGGCGCTTCAG
Seq C2 exon
GGGAAGCTGTAGTACAGGAAAGGTTATAGCACTAAAATGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087717-'5-10,'5-7,6-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(39.8=84.8)
A:
PF154941=SRCR_2=FE(38.8=100)
C2:
PF154941=SRCR_2=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGATCAGTGCTGAGAACTC
R:
ACATTTTAGTGCTATAACCTTTCCTG
Band lengths:
170-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]