RnoEX6035659 @ rn6
Exon Skipping
Gene
ENSRNOG00000008058 | Tmprss5
Description
transmembrane serine protease 5 [Source:RGD Symbol;Acc:628625]
Coordinates
chr8:53420413-53423039:+
Coord C1 exon
chr8:53420413-53420548
Coord A exon
chr8:53420748-53420861
Coord C2 exon
chr8:53422996-53423039
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTCCTCTGTCTAGGCT
3' ss Score
10.43
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
TATCTTTCAGAATAAATGGTGAGGATCTTCTGCTTGAAGTGCAAGTAAGGGCTCGGCCAGACTGGCTCCTGGTCTGCCATGAGGGCTGGAACCCTGCCCTGGGGATGCACATCTGCCAGAGTCTTGGATATTTCAG
Seq A exon
GCTCACTCAACACAAGGCAGTGAATCTGTCTGACATCAAGCTCAACAGATCCCAGGAGTTTGCTCAGCTCTCTGCTAGACCGGGAAGCCTTGTAGAGGAGGCATGGCAGCCCAG
Seq C2 exon
CACTAACTGTCCTTCTGGCCGAATTGTTTCTCTCAAATGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008058-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(39.8=84.8)
A:
PF154941=SRCR_2=FE(38.8=100)
C2:
PF154941=SRCR_2=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTTCAGAATAAATGGTGAGGATC
R:
AGAACATTTGAGAGAAACAATTCGGC
Band lengths:
178-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]