GgaEX6025888 @ galGal4
Exon Skipping
Gene
ENSGALG00000007340 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr24:5495931-5496394:-
Coord C1 exon
chr24:5496259-5496394
Coord A exon
chr24:5496086-5496187
Coord C2 exon
chr24:5495931-5495974
Length
102 bp
Sequences
Splice sites
3' ss Seq
CGCCGCTGTTCCTTCTGCAGAGC
3' ss Score
10.92
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGTCTTTCAGGATCCAGGCGGGTGCCTCCCTGCTGGCGGTGCGGCCGCAGGACCGGTCCCGATGGCTGCTGGCCTGCTATGAGCACTGGCAGCCCACGCTGGGCACACGGCTGTGCCGGCACCTCGGGGCGCTCAG
Seq A exon
AGCGGTACATCAGAAGGGGGTGAAGCTGACGGACGTGAGCATGGAGGACGGGCAGGAGTTTGCCCAGGTGGGGTCCAGCCTGGAGGACGCGTGGCAGATCAG
Seq C2 exon
GAGCAGCTGCGAGTCGGGCCGTGTTGTGGCCCTGCAGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007340-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(41.5=84.8)
A:
PF154941=SRCR_2=FE(36.2=100)
C2:
PF154941=SRCR_2=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTTCAGGATCCAGGCGG
R:
CTGAGCACTGCAGGGCCA
Band lengths:
180-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]