GgaEX6025888 @ galGal3
Exon Skipping
Gene
ENSGALG00000007340 | F1NC10_CHICK
Description
NA
Coordinates
chr24:5618245-5618752:-
Coord C1 exon
chr24:5618573-5618752
Coord A exon
chr24:5618400-5618501
Coord C2 exon
chr24:5618245-5618288
Length
102 bp
Sequences
Splice sites
3' ss Seq
CGCCGCTGTTCCTTCTGCAGAGC
3' ss Score
10.92
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCCCTGCGTGAAGCGCTGCGGGGAGGTGAGGTCGGTGCTGTCAGTGTCTTTCAGGATCCAGGCGGGTGCCTCCCTGCTGGCGGTGCGGCCGCAGGACCGGTCCCGATGGCTGCTGGCCTGCTATGAGCACTGGCAGCCCACGCTGGGCACACGGCTGTGCCGGCACCTCGGGGCGCTCAG
Seq A exon
AGCGGTACATCAGAAGGGGGTGAAGCTGACGGACGTGAGCATGGAGGACGGGCAGGAGTTTGCCCAGGTGGGGTCCAGCCTGGAGGACGCGTGGCAGATCAG
Seq C2 exon
GAGCAGCTGCGAGTCGGGCCGTGTTGTGGCCCTGCAGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007340-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(41.5=63.9)
A:
PF154941=SRCR_2=FE(36.2=100)
C2:
PF154941=SRCR_2=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGGGAGGTGAGGTC
R:
CACTGCAGGGCCACAACAC
Band lengths:
204-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]