MmuEX7006222 @ mm10
Exon Skipping
Gene
ENSMUSG00000032268 | Tmprss5
Description
transmembrane protease, serine 5 (spinesin) [Source:MGI Symbol;Acc:MGI:1933407]
Coordinates
chr9:49109002-49111511:+
Coord C1 exon
chr9:49109002-49109137
Coord A exon
chr9:49109342-49109455
Coord C2 exon
chr9:49111468-49111511
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTCTTCTGCCCAGGCT
3' ss Score
8.1
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
TATCTTTCAGAATAAATGGAGAGGATCTTCTGCTTCAAGTACAAGTAAGAGCTCGGCCAGACTGGCTCCTGGTCTGCCACGAGGGCTGGAGCCCCGCCCTGGGCATGCACATCTGCAAGAGTCTTGGGCATATCAG
Seq A exon
GCTTACTCAACACAAGGCCGTGAATCTGTCTGACATCAAGCTCAACAGATCCCAGGAGTTTGCTCAACTCTCTGCTAGACCGGGAGGCCTTGTAGAGGAGTCATGGAAACCCAG
Seq C2 exon
CGCTAACTGTCCTTCTGGCCGAATTGTTTCTCTCAAATGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032268-'3-21,'3-13,7-21=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(39.8=84.8)
A:
PF154941=SRCR_2=FE(38.8=100)
C2:
PF154941=SRCR_2=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTCAGAATAAATGGAGAGGATCT
R:
CAGAACATTTGAGAGAAACAATTCGG
Band lengths:
178-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types