BtaEX6059046 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010419 | CYP2R1
Description
Bos taurus cytochrome P450, family 2, subfamily R, polypeptide 1 (CYP2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076267]
Coordinates
chr15:38439633-38445583:+
Coord C1 exon
chr15:38439633-38440249
Coord A exon
chr15:38441831-38442160
Coord C2 exon
chr15:38444432-38445583
Length
330 bp
Sequences
Splice sites
3' ss Seq
GAACACTTTTTCTCTTACAGGAC
3' ss Score
11.15
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
TGCTGTTGAAACATACAATGGTAGCCCTTTTGACTTAAAACAATTAGTAACAAATGCTGTTTCAAACATAACCAATCTGGTCATTTTTGGAGAACGATTCACTTATGAAGACACTGATTTTCAGCACATGATTGAGTTATTTAGTGAAAATGTGGAACTAGCTGCCAGCGCCACAGTCTTCCTCTATAATGCCTTTCCATGGATTGGCATCTTACCTTTTGGAAAACATCAACAACTGTTTAGAAATGCAGCCGTGGTCTATGACTTTCTGTCTAGGCTTATTGAAAAAGCTTCCATCAACAGAAAACCTCAGTTACCTCAGCATTTTGTTGATGCTTATTTAGATGAGATGGAAAGAAGTAAAAATGACCCATCATCTACTTTCTCCAAAGAAAACTTAATTTTCTCTGTGGGTGAACTCATCATTGCTGGAACTGAAACTACAACTAATGTGCTGCGGTGGGCAGTTCTTTTCATGGCCCTTTATCCTAACATTCAAG
Seq A exon
GACAAGTTCAGAAAGAGATTGACTTGATTATAGGACCCAGTGGGAAGCCTTCTTGGGATGAAAAGTGCAAAATGCCTTATACCGAGGCAGTTTTGCATGAAGTTTTAAGGTTCTGTAACATAGTGCCATTGGGGATTTTCCATGCAACCTCTGAGGATGCAGTTGTACGTGGTTATTCCATTCCTAAAGGCACAACAGTAATCACAAATCTTTATTCTGTACACTTTGATGAAAAGTATTGGAGAGACCCAGAAATATTCTATCCAGAGCGATTTTTGGACAGCAGTGGACATTTTGCCAAGAAGGAAGCTTTGATTCCCTTTTCCCTAG
Seq C2 exon
GGAGAAGACATTGTCTTGGAGAACAGCTGGCTCGGATGGAAATGTTCCTGTTTTTCACAGCATTGCTTCAGAGGTTTCATTTGCATTTTCCACATGAACTGGTTCCAAATCTGAAGCCCAGGTTAGGCATGACATTGCAACCCCAGCCCTACCTCATCTGTGCAGAAAGACGCTGAAAGTACACAGATGTTTTGTGGAACAAGTTGTTTGCCTCACCCCCAAACCTTATTTAATTCCTGTGTTTGGACAGGAATCACAGCATCATAAAACCAAATGAACAGAGATGTTTCTTTAAAAACATCTACCATAATAATATGCATTAGTGTTAGTCGCTCAGTCGTGCCCAACTCTTTGCCACCCCATGGACTGTAGCCCACCAGGCTCCTCTGTCCGTGAGATTTTCCAGGCAAGGATACTGTAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCCAACCCAGGGATCAAACCTGGGTCTCCTGCACTGCAGGCAAATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010419-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(45.0=100)
A:
PF0006717=p450=PD(1.2=0.9),PF0006717=p450=FE(62.1=100)
C2:
PF0006717=p450=PD(30.5=91.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTTCCATGGATTGGCAT
R:
GAGCCAGCTGTTCTCCAAGAC
Band lengths:
344-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]