MmuEX6013351 @ mm9
Exon Skipping
Gene
ENSMUSG00000030670 | Cyp2r1
Description
cytochrome P450, family 2, subfamily r, polypeptide 1 [Source:MGI Symbol;Acc:MGI:2449771]
Coordinates
chr7:121693680-121696867:-
Coord C1 exon
chr7:121696235-121696867
Coord A exon
chr7:121695267-121695596
Coord C2 exon
chr7:121693680-121693961
Length
330 bp
Sequences
Splice sites
3' ss Seq
TTAACATGTTTCTCTGACAGGAC
3' ss Score
10.53
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
TGCTATTGAAACATACAAAGGTGGACCTTTTGACCTCAAGCAACTGATAACAAATGCTGTTTCAAACATAACTAACCTTATCCTTTTTGGAGAACGATTCACTTATGAAGACACTGATTTTCAGCACATGATTGAATTATTTAGTGAGAATGTGGAACTAGCTGCCAGTGCTCCAGTCTTCCTTTATAATGCATTTCCATGGATTGGCATCTTACCTTTTGGGAAACATCAAAGACTATTTAGAAATGCAGATGTGGTCTATGATTTCCTCTCCAGACTTATTGAAAAAGCTGCAGTCAATAGAAAGCCTCATTTACCTCACCATTTTGTTGATGCCTATTTAGATGAGATGGATCAAGGTCAAAATGATCCTTTATCTACATTTTCCAAAGAGAATCTAATTTTTTCAGTGGGTGAACTCATCATTGCTGGAACTGAAACTACAACCAATGTGCTCCGCTGGGCAATTCTTTTCATGGCCCTTTATCCTAATATTCAAG
Seq A exon
GACAAGTTCATAAAGAGATTGATTTAATTGTGGGCCACAACAGGAGACCTTCTTGGGAATACAAATGCAAAATGCCTTATACTGAAGCAGTTTTACATGAAGTTTTAAGATTCTGTAATATAGTTCCACTGGGAATTTTCCATGCAACTTCGGAAGATGCAGTTGTACGTGGCTATTCCATTCCTAAAGGCACAACAGTCATTACAAATCTTTATTCTGTTCACTTTGATGAAAAGTACTGGAAAGATCCAGACATGTTCTATCCTGAGCGATTTCTGGACAGCAATGGATATTTTACTAAAAAGGAAGCTTTGATTCCTTTTTCTCTAG
Seq C2 exon
GGAGAAGACATTGTCTTGGAGAACAGCTGGCTCGAATGGAAATGTTCTTGTTTTTTACATCATTACTTCAGCAATTTCATTTGCATTTTCCACATGAACTAGTTCCAAATCTGAAGCCCAGGTTGGGCATGACATTACAACCCCAGCCCTACCTCATCTGTGCAGAAAGACGCTGAAAGTGCAAAATGTATTGGGGAATAACCTTGTTGAATCACAATAATGGTGTTTGGGCCAAAGCCACATTTTTATAAAGCCAAGTAAACACAAATACACTGTTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030670-'2-9,'2-7,3-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(46.0=100)
A:
PF0006717=p450=PD(1.2=0.9),PF0006717=p450=FE(62.1=100)
C2:
PF0006717=p450=PD(11.8=91.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTTCCATGGATTGGCATC
R:
TTCCATTCGAGCCAGCTGTTC
Band lengths:
352-682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: